Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MIR8058-201ENST00000615737 89 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AL354798.1-201ENST00000622505 329 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 AL606534.2-204ENST00000635008 178 ntBASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLIP3Q96DZ5 MTND5P7-201ENST00000413558 1798 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 RNU6-778P-201ENST00000363269 103 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 RNU1-73P-201ENST00000383971 164 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 SNORA41-201ENST00000384675 132 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 SNORA40C-201ENST00000391285 128 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 MIR1251-201ENST00000408552 70 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC073063.1-201ENST00000434352 607 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC083863.1-201ENST00000438811 231 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 MTATP6P7-201ENST00000453315 681 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC026801.1-201ENST00000497178 464 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 MTND1P19-201ENST00000511780 315 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 SNORA31.19-201ENST00000517079 126 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 RN7SKP40-201ENST00000517211 242 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 RNU6-323P-201ENST00000521915 107 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC131281.1-201ENST00000522984 164 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AL391261.3-201ENST00000557194 520 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 H3F3AP1-201ENST00000559984 334 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC012119.1-201ENST00000603184 222 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 AC091167.4-201ENST00000605079 184 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 MIR92B-201ENST00000607575 96 ntBASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.79□□□□□ -1.8
CLIP3Q96DZ5 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 Y_RNA.380-201ENST00000365663 111 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RNU6-198P-201ENST00000384258 104 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 Y_RNA.552-201ENST00000384665 112 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RNA5SP252-201ENST00000391131 119 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 PTMAP2-201ENST00000397627 327 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 NDUFS5P4-201ENST00000412983 318 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RPS15AP10-201ENST00000432472 382 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 DYNLT3P2-201ENST00000442517 295 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 CHEK2P4-201ENST00000450340 246 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RPL26P9-201ENST00000457466 433 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC034236.1-201ENST00000469891 373 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RN7SL585P-201ENST00000470538 280 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC006517.1-201ENST00000480485 328 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RNU6-572P-201ENST00000516724 80 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 RNU6-711P-201ENST00000517255 106 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC022616.4-201ENST00000522985 181 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 TRAV37-201ENST00000553906 342 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC012468.1-201ENST00000604888 430 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC138627.2-201ENST00000624202 601 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AC233263.6-201ENST00000631132 1963 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 AL079305.1-201ENST00000623159 3008 ntBASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLIP3Q96DZ5 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 SRP72P2-201ENST00000344851 1979 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.210-201ENST00000364161 110 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 RNU6-213P-201ENST00000384051 104 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 MT-TW-201ENST00000387382 68 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 MIR1252-201ENST00000408861 65 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL356968.1-201ENST00000416622 474 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL353621.1-201ENST00000418219 243 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC007560.1-201ENST00000426912 237 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL158071.1-201ENST00000430315 461 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL359672.1-201ENST00000442302 409 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AL078601.1-201ENST00000444542 271 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 RANP8-201ENST00000444720 713 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 OSTCP8-201ENST00000445117 448 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 NDUFB1P2-201ENST00000449477 176 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 RPL23AP14-201ENST00000468281 468 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 RN7SL323P-201ENST00000494712 295 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 HMGB3P17-201ENST00000504195 649 ntBASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.77□□□□□ -1.81
CLIP3Q96DZ5 AC096745.1-201ENST00000509945 370 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms