Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 CKAP2P1-201ENST00000555477 2049 ntBASIC1.93□□□□□ -2.1
RPUSD4Q96CM3 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.93□□□□□ -2.1
RPUSD4Q96CM3 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 Y_RNA.51-201ENST00000362725 102 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 SNORD3E-201ENST00000362899 217 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 RNU6-456P-201ENST00000384493 107 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MIR34A-201ENST00000385130 110 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 RNU6-550P-201ENST00000391057 101 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 DEFB108C-201ENST00000400154 252 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 RNU6-607P-201ENST00000411283 108 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MTATP6P18-201ENST00000417994 673 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC105272.1-201ENST00000438604 198 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MTND1P18-201ENST00000448191 573 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL441985.1-201ENST00000457727 251 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 TPT1P7-201ENST00000458300 517 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 snoU13.22-201ENST00000459428 104 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MTAPP1-201ENST00000489154 819 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 SCARNA3-201ENST00000517097 143 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AP004607.1-201ENST00000524456 203 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 OR5AL2P-201ENST00000532185 920 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC079598.5-201ENST00000547460 117 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC078814.3-201ENST00000553036 491 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MTCO3P23-201ENST00000561363 289 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AGGF1P4-201ENST00000568249 801 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC106782.4-201ENST00000568264 210 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MIR4703-201ENST00000577728 79 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MIR3117-201ENST00000584034 78 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL670379.10-201ENST00000604330 253 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 ATP1B3P1-201ENST00000605365 821 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL670379.9-201ENST00000605428 253 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL121917.1-203ENST00000605534 577 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 AL031601.2-202ENST00000622650 282 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 U6.114-201ENST00000636407 96 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MTND4P27-201ENST00000450813 1354 ntBASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC1.92□□□□□ -2.1
RPUSD4Q96CM3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 MIR21-201ENST00000362134 72 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNU6-859P-201ENST00000362728 107 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNU6-486P-201ENST00000363116 107 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 SNORA62.1-201ENST00000364287 154 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNA5SP37-201ENST00000365420 130 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 MIR147B-201ENST00000390185 80 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNU6-220P-201ENST00000390919 107 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AL360182.1-201ENST00000397433 468 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 UBE2V1P2-201ENST00000397758 440 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RPS4XP8-201ENST00000402039 771 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 FTH1P15-201ENST00000406984 280 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNU2-3P-201ENST00000410144 191 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 SRIP2-201ENST00000428470 166 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC104389.3-201ENST00000445629 235 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 HIGD1AP2-201ENST00000446367 280 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNU7-26P-201ENST00000458980 63 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC093534.1-201ENST00000504977 132 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC108078.1-201ENST00000508073 725 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC105313.1-201ENST00000509121 353 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 LRRC34P2-201ENST00000514850 553 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNA5SP112-201ENST00000515937 99 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 RNA5SP503-201ENST00000517047 117 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 APAF1-207ENST00000547743 651 ntTSL 3 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 CR383656.8-201ENST00000549046 145 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 SUB1P2-201ENST00000556401 297 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 ELOCP29-201ENST00000588193 334 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 DEFB131E-202ENST00000602581 683 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC073648.5-201ENST00000603502 305 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC008945.2-201ENST00000606056 604 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC098614.4-201ENST00000607601 462 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 HMGB1P24-202ENST00000615653 685 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 AC048344.4-201ENST00000619744 527 ntBASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.91□□□□□ -2.1
RPUSD4Q96CM3 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms