Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC097462.2-201ENST00000504623 481 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 PTP4A1P4-201ENST00000512479 322 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC026782.1-201ENST00000512952 449 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 RNA5SP519-201ENST00000516480 119 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.708-201ENST00000516950 96 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AP005902.1-201ENST00000521358 186 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC022655.2-201ENST00000577280 318 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 MIR6820-201ENST00000611508 62 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC098657.3-201ENST00000620434 263 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC002064.3-201ENST00000623448 346 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AC073544.1-201ENST00000600110 1595 ntBASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC28AQ8IWP9 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.535-201ENST00000384612 99 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 RNA5SP390-201ENST00000410191 113 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC108032.1-201ENST00000416706 207 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 MTND5P19-201ENST00000424872 1794 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC007969.2-201ENST00000441891 191 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 RPS29P12-201ENST00000460178 152 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 ACA59.1-201ENST00000515966 143 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 RNA5SP49-201ENST00000516450 115 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 CKS1BP7-201ENST00000522230 235 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 MIR4284-201ENST00000578924 81 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 MIR5690-201ENST00000583739 73 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 uc_338.14-201ENST00000613162 166 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AP000346.3-201ENST00000622821 210 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 AC241585.2-209ENST00000638217 143 ntBASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CCDC28AQ8IWP9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-227P-201ENST00000362865 103 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 Y_RNA.259-201ENST00000364619 101 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-622P-201ENST00000384272 103 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR585-201ENST00000384887 94 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR521-1-201ENST00000384902 87 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 SNORA26.7-201ENST00000391288 122 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MTCYBP4-201ENST00000401524 249 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 RNU6-1050P-201ENST00000410388 107 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AP000275.1-201ENST00000411943 390 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC016769.2-201ENST00000414815 475 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC006946.1-201ENST00000429106 328 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 USP9YP30-201ENST00000430729 455 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 HMGN2P31-201ENST00000432430 273 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC004383.1-201ENST00000438135 289 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 RPL21P2-201ENST00000440049 481 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC243964.1-201ENST00000441814 261 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 SNORD19B-201ENST00000459623 84 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC021205.2-201ENST00000480069 347 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AP001025.1-201ENST00000486139 332 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AF213884.1-201ENST00000488102 463 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MRPS36P2-201ENST00000512569 299 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 APOOP3-201ENST00000536787 586 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC090897.2-201ENST00000581715 130 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR5684-201ENST00000585074 65 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR3138-201ENST00000585238 82 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC006557.5-201ENST00000603126 811 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AP001836.1-201ENST00000604675 523 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR3976-201ENST00000606807 139 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 AC096772.1-201ENST00000609146 564 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 MIR8076-201ENST00000611401 83 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 PISRT1.1-201ENST00000616930 107 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 FP236240.3-201ENST00000623061 327 ntBASIC3.05□□□□□ -1.92
CCDC28AQ8IWP9 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms