Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC066616.2-201ENST00000559334 1481 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP48Q86UV5 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 RNA5SP120-201ENST00000410900 112 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 HMGN2P16-201ENST00000456802 261 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 RPL23AP45-201ENST00000476406 468 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 RNU1-61P-201ENST00000516107 151 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 SCARNA16.2-201ENST00000516520 172 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 AC109479.2-201ENST00000517842 174 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.52□□□□□ -1.69
USP48Q86UV5 HMGB1P14-201ENST00000557424 591 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.52□□□□□ -1.69
USP48Q86UV5 AC124312.5-201ENST00000604451 268 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 AL161629.2-201ENST00000615347 275 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 MIR6852-201ENST00000621699 66 ntBASIC4.52□□□□□ -1.69
USP48Q86UV5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP48Q86UV5 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
USP48Q86UV5 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP48Q86UV5 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.51□□□□□ -1.69
USP48Q86UV5 AC117470.1-201ENST00000381974 330 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 RNU6-842P-201ENST00000384269 107 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 RNY1P14-201ENST00000384426 108 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 MIR199A2-201ENST00000385289 110 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USP48Q86UV5 HLFP1-201ENST00000402375 499 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 RPL23AP50-201ENST00000434149 455 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 RPL21P10-201ENST00000463521 490 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 TRBV12-2-201ENST00000489763 344 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.51□□□□□ -1.69
USP48Q86UV5 RNU6-470P-201ENST00000515954 104 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 ACA59.1-201ENST00000515966 143 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 RNA5SP384-201ENST00000516615 116 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.51□□□□□ -1.69
USP48Q86UV5 AC004817.2-201ENST00000561794 651 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 AC008269.2-201ENST00000561915 1105 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.51□□□□□ -1.69
USP48Q86UV5 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.51□□□□□ -1.69
USP48Q86UV5 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.51□□□□□ -1.69
USP48Q86UV5 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.51□□□□□ -1.69
USP48Q86UV5 AC244205.2-202ENST00000635781 342 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
USP48Q86UV5 ZNF807-201ENST00000328088 1707 ntBASIC4.51□□□□□ -1.69
USP48Q86UV5 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.51□□□□□ -1.69
USP48Q86UV5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP48Q86UV5 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.51□□□□□ -1.69
USP48Q86UV5 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.5□□□□□ -1.69
USP48Q86UV5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
USP48Q86UV5 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 RNU6-490P-201ENST00000362985 107 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 Y_RNA.252-201ENST00000364556 101 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 RNU6-596P-201ENST00000365395 98 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 Y_RNA.557-201ENST00000384680 107 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 MT-TR-201ENST00000387439 65 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.5□□□□□ -1.69
USP48Q86UV5 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.5□□□□□ -1.69
USP48Q86UV5 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.5□□□□□ -1.69
USP48Q86UV5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.5□□□□□ -1.69
USP48Q86UV5 AC008155.2-201ENST00000464337 397 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AC084357.1-201ENST00000473404 255 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.5□□□□□ -1.69
USP48Q86UV5 RNU6-764P-201ENST00000516396 105 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 RNU6-703P-201ENST00000516946 107 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 AC110588.1-201ENST00000559699 137 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AC018889.1-201ENST00000605372 397 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 AC090425.1-201ENST00000610007 140 ntBASIC4.5□□□□□ -1.69
USP48Q86UV5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.5□□□□□ -1.69
USP48Q86UV5 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.5□□□□□ -1.69
USP48Q86UV5 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.5□□□□□ -1.69
USP48Q86UV5 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP48Q86UV5 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.49□□□□□ -1.69
USP48Q86UV5 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP48Q86UV5 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
USP48Q86UV5 CUL1P1-201ENST00000509510 2425 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 RNU6-827P-201ENST00000365553 106 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 Y_RNA.401-201ENST00000383965 117 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 Y_RNA.527-201ENST00000384573 102 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 SNORA41-201ENST00000384675 132 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 RPL26P27-201ENST00000414397 437 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 AL117339.3-201ENST00000418733 162 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 HMGN2P30-201ENST00000423237 256 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 RPL37P4-201ENST00000448908 268 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP48Q86UV5 MTATP6P7-201ENST00000453315 681 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 SNORD105B-201ENST00000458770 79 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 RN7SL807P-201ENST00000470923 297 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 AC022493.2-201ENST00000506122 481 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.49□□□□□ -1.69
USP48Q86UV5 RNU6-120P-201ENST00000516077 103 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 RNU6-264P-201ENST00000517134 104 ntBASIC4.49□□□□□ -1.69
USP48Q86UV5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.49□□□□□ -1.69
USP48Q86UV5 CPDP1-201ENST00000579660 283 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms