Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL590556.1-201ENST00000423231 483 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC130509.1-201ENST00000464158 433 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AL160314.1-201ENST00000490836 438 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 RNU6-165P-201ENST00000517170 99 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 MTCO2P15-201ENST00000532655 656 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 CYP3A137P-201ENST00000562436 69 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC093249.1-201ENST00000567049 203 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC005951.2-201ENST00000576282 495 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 KC877982.1-201ENST00000602313 470 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 AC009032.1-201ENST00000617574 431 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 STMN1P1-201ENST00000617809 440 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 MIR6810-201ENST00000622701 70 ntBASIC-0.06□□□□□ -2.42
LINC00643Q86TS7 RNU1-17P-201ENST00000363022 152 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 VTRNA1-3-201ENST00000365645 89 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 MIR216A-201ENST00000385063 110 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AL133475.1-201ENST00000404414 305 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 SNORA11.2-201ENST00000408318 127 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AL035398.1-201ENST00000430869 322 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 HMGB3P12-201ENST00000438745 556 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AC092001.1-201ENST00000453012 261 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 RPS26P45-201ENST00000471748 340 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 SNORA31.2-201ENST00000516019 134 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 RNU6-581P-201ENST00000516214 105 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AC091544.4-201ENST00000555268 342 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AC136619.2-201ENST00000563361 631 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 HMGB1P33-201ENST00000563485 527 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AC098848.2-201ENST00000588023 330 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AL512605.2-201ENST00000592972 256 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 DUXAP11-201ENST00000603858 526 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 LARP7P1-201ENST00000605576 316 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AL590240.4-201ENST00000616908 390 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 AL133216.2-202ENST00000634512 349 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 MTCO1P18-201ENST00000455518 1419 ntBASIC-0.07□□□□□ -2.42
LINC00643Q86TS7 SNORD44.1-201ENST00000363202 61 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 SNORD114-27-201ENST00000363766 70 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 RNU6-1274P-201ENST00000384557 107 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 CCNG1P1-201ENST00000406783 885 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 MTCO3P18-201ENST00000440206 761 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC002381.1-201ENST00000447049 280 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC104058.1-201ENST00000448028 297 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC093259.1-201ENST00000509755 300 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 MTCO3P7-201ENST00000510008 774 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 RNA5SP290-201ENST00000517133 127 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 HSPE1P4-201ENST00000550617 308 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 HMGN1P30-201ENST00000589286 268 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AP001429.1-201ENST00000602568 530 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC105148.1-201ENST00000604961 409 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC022513.1-201ENST00000624512 117 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AL355480.1-201ENST00000629041 99 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 AC241585.2-209ENST00000638217 143 ntBASIC-0.08□□□□□ -2.42
LINC00643Q86TS7 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 RNU6-878P-201ENST00000384578 110 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 MIR520A-201ENST00000384862 85 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL356967.1-201ENST00000406305 431 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC008267.5-201ENST00000424928 265 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 PSMA6P3-201ENST00000428242 164 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 ZNF965P-201ENST00000432501 817 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC233266.1-201ENST00000454518 96 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC005840.1-201ENST00000498412 377 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC091917.2-201ENST00000505002 744 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 RNU5A-4P-201ENST00000516588 111 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC060771.1-201ENST00000582031 164 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC012065.4-201ENST00000602445 679 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL355598.1-201ENST00000604169 202 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC025811.1-201ENST00000604312 472 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC013412.1-201ENST00000610687 192 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC242852.1-201ENST00000612151 96 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AC244015.1-201ENST00000622301 99 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 AL159972.1-201ENST00000625150 448 ntBASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
LINC00643Q86TS7 RNU6-1339P-201ENST00000363574 91 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 RNU6-743P-201ENST00000364151 106 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 MIR194-1-201ENST00000384892 85 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC-0.1□□□□□ -2.43
LINC00643Q86TS7 RNU6-233P-201ENST00000410845 141 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms