Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 Z85995.1-201ENST00000415547 335 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 Z82210.1-201ENST00000440037 231 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC107399.1-201ENST00000451226 265 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC092798.1-201ENST00000458542 409 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.635-201ENST00000459041 101 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 RPL7P43-201ENST00000478876 753 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 RNA5SP341-201ENST00000516261 117 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 RNU6-914P-201ENST00000516749 109 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 RNU6-566P-201ENST00000516790 107 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AP000867.2-201ENST00000532468 320 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 TRAV37-201ENST00000553906 342 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AMZ2P1-203ENST00000565833 850 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 MIR3672-201ENST00000584290 82 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC023043.2-201ENST00000589678 1026 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 DUSP12P1-201ENST00000612874 516 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL035425.3-201ENST00000564206 4996 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 MIR22-201ENST00000362190 85 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.135-201ENST00000363439 95 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.419-201ENST00000384041 102 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 RNU6-1297P-201ENST00000384415 104 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 RNU6-1035P-201ENST00000384477 107 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 MIR128-1-201ENST00000384921 82 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 SNORA48.2-201ENST00000390926 124 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 RNA5SP252-201ENST00000391131 119 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC074085.1-201ENST00000413598 418 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL139396.1-201ENST00000421137 167 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC005534.2-201ENST00000431047 433 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC010099.1-201ENST00000455434 375 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL031183.1-201ENST00000457667 207 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 MTND4P17-201ENST00000470444 350 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC117440.1-201ENST00000474107 571 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.682-201ENST00000516457 100 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 RNU6-1069P-201ENST00000516612 133 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 RNA5SP454-201ENST00000517231 127 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC009812.2-201ENST00000517657 457 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 CYCSP27-201ENST00000527643 293 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AC107294.1-201ENST00000609524 467 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 MAPK10-322ENST00000641485 4530 ntBASIC3.63□□□□□ -1.83
VPS53Q5VIR6 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 MIR422A-201ENST00000362286 90 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RNU6-1252P-201ENST00000363054 104 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RNU6-45P-201ENST00000384471 107 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AL360182.1-201ENST00000397433 468 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 MIR548F5-201ENST00000408421 86 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RNU2-33P-201ENST00000410344 192 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RN7SKP158-201ENST00000410453 326 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC007919.1-201ENST00000429380 217 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RPS3AP52-201ENST00000435639 297 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RPL21P41-201ENST00000459863 264 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC104472.2-201ENST00000469035 601 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC079140.5-201ENST00000507882 310 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 RPL39P5-202ENST00000512505 151 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 ATP1B3P1-201ENST00000605365 821 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 FAM157A-202ENST00000615155 405 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC126177.8-201ENST00000618339 1015 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AC091953.5-201ENST00000622919 233 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AL353743.1-202ENST00000431724 1695 ntBASIC3.62□□□□□ -1.83
VPS53Q5VIR6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms