Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL353729.1-201ENST00000425044 720 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC005534.2-201ENST00000431047 433 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC007677.1-201ENST00000445757 515 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 BX510359.1-201ENST00000456973 237 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1170P-201ENST00000515974 106 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR2276-201ENST00000516886 89 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC107934.2-201ENST00000518653 310 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 CYP2C61P-201ENST00000604072 290 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 MIR1302-2-201ENST00000607096 138 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC091953.5-201ENST00000622919 233 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 AC073346.2-201ENST00000624724 2058 ntBASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.32□□□□□ -1.88
PTCHD3Q3KNS1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL136164.4-201ENST00000625013 2135 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 MTND4P23-201ENST00000447723 1363 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-37P-201ENST00000362692 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-11P-201ENST00000364234 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-7-201ENST00000364784 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-8-201ENST00000365467 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-25P-201ENST00000383873 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1-201ENST00000383898 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-48P-201ENST00000384161 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-36P-201ENST00000384172 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-4P-201ENST00000384205 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-5P-201ENST00000384238 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-3P-201ENST00000384314 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-16P-201ENST00000384385 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-15P-201ENST00000384534 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-2-201ENST00000384627 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-29P-201ENST00000384637 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-9-201ENST00000384776 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-33P-201ENST00000384793 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL445529.1-201ENST00000398713 389 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-370P-201ENST00000411008 104 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-55P-201ENST00000411092 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-1037P-201ENST00000459571 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-928P-201ENST00000516876 104 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL163153.1-201ENST00000554223 283 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC006557.5-201ENST00000603126 811 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC123912.5-201ENST00000605470 343 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-6P-201ENST00000606623 107 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC064836.2-201ENST00000609491 462 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL133215.3-201ENST00000609801 448 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL591516.1-201ENST00000611326 274 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AL161423.1-201ENST00000613700 262 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 MIR6128-201ENST00000615528 109 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 AC084781.2-201ENST00000615568 161 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 PLCE1P1-201ENST00000622094 305 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 SCARNA4-202ENST00000625402 129 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 MTND4LP32-201ENST00000636111 270 ntBASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.31□□□□□ -1.88
PTCHD3Q3KNS1 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RNA5SP295-201ENST00000362655 121 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RNA5SP197-201ENST00000363357 119 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 Y_RNA.187-201ENST00000363918 113 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 Z98749.2-208ENST00000381646 500 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 SNORA9-201ENST00000384215 133 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-72P-201ENST00000384285 79 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RNU6-43P-201ENST00000384302 107 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 MIR591-201ENST00000385290 95 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RN7SKP111-201ENST00000410349 271 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC126124.2-201ENST00000413542 321 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AL356968.1-201ENST00000416622 474 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC099548.1-201ENST00000421443 426 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RPL23AP82-202ENST00000427528 469 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC013470.1-201ENST00000453438 462 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 ELOCP24-201ENST00000456370 334 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 SNORD5.1-201ENST00000458800 75 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 CENPBD1P1-201ENST00000464061 469 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RN7SL601P-201ENST00000471221 293 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RPL23AP45-201ENST00000476406 468 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC021205.2-201ENST00000480069 347 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 RPL30P14-201ENST00000482744 348 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 AC113155.1-201ENST00000511141 769 ntBASIC3.3□□□□□ -1.88
PTCHD3Q3KNS1 IGKV2-26-201ENST00000518305 343 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms