Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNY3P3-201ENST00000363816 102 ntBASIC2.51□□□□□ -2.01
SOX3P41225 Z98749.2-208ENST00000381646 500 ntBASIC2.51□□□□□ -2.01
SOX3P41225 Y_RNA.453-201ENST00000384223 109 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RNU6-45P-201ENST00000384471 107 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RNU6-393P-201ENST00000384475 107 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RNU6-658P-201ENST00000384606 106 ntBASIC2.51□□□□□ -2.01
SOX3P41225 Y_RNA.573-201ENST00000384763 105 ntBASIC2.51□□□□□ -2.01
SOX3P41225 MIR592-201ENST00000384959 97 ntBASIC2.51□□□□□ -2.01
SOX3P41225 MIR9-1-201ENST00000385198 89 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RPL21P75-201ENST00000396599 483 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RPL21P28-201ENST00000401418 483 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AL592114.1-201ENST00000403842 483 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AL606923.1-201ENST00000406616 190 ntBASIC2.51□□□□□ -2.01
SOX3P41225 BTF3P7-201ENST00000407097 488 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RNU6-1068P-201ENST00000410958 103 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC023141.4-201ENST00000412031 328 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AL353621.1-201ENST00000418219 243 ntBASIC2.51□□□□□ -2.01
SOX3P41225 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX3P41225 NUP35P1-201ENST00000422734 947 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC063976.3-201ENST00000426849 329 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.51□□□□□ -2.01
SOX3P41225 AC098831.1-201ENST00000440661 216 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RPL21P39-201ENST00000463605 483 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RPL21P93-201ENST00000480465 489 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC087190.1-201ENST00000484462 480 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC093591.1-201ENST00000491435 481 ntBASIC2.51□□□□□ -2.01
SOX3P41225 RPL21P16-201ENST00000495531 483 ntBASIC2.51□□□□□ -2.01
SOX3P41225 MTND4P7-201ENST00000523876 130 ntBASIC2.51□□□□□ -2.01
SOX3P41225 SUB1P1-201ENST00000524415 382 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 AC004486.1-201ENST00000546846 233 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX3P41225 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX3P41225 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.51□□□□□ -2.01
SOX3P41225 AC073539.2-201ENST00000597113 165 ntBASIC2.51□□□□□ -2.01
SOX3P41225 AC007014.2-201ENST00000615581 479 ntBASIC2.51□□□□□ -2.01
SOX3P41225 uc_338.34-201ENST00000617467 174 ntBASIC2.51□□□□□ -2.01
SOX3P41225 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
SOX3P41225 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 Y_RNA.89-201ENST00000363031 102 ntBASIC2.5□□□□□ -2.01
SOX3P41225 Y_RNA.399-201ENST00000383955 105 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU6-1027P-201ENST00000383998 107 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU6-38P-201ENST00000384085 107 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU6-434P-201ENST00000384376 107 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU6-1179P-201ENST00000384667 107 ntBASIC2.5□□□□□ -2.01
SOX3P41225 SNORA16.2-201ENST00000390991 127 ntBASIC2.5□□□□□ -2.01
SOX3P41225 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SOX3P41225 AL356057.2-201ENST00000403318 432 ntBASIC2.5□□□□□ -2.01
SOX3P41225 MIR1289-1-201ENST00000408836 144 ntBASIC2.5□□□□□ -2.01
SOX3P41225 Y_RNA.623-201ENST00000411128 95 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.5□□□□□ -2.01
SOX3P41225 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.5□□□□□ -2.01
SOX3P41225 AC007560.1-201ENST00000426912 237 ntBASIC2.5□□□□□ -2.01
SOX3P41225 ARL5AP4-201ENST00000430731 512 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.5□□□□□ -2.01
SOX3P41225 AL078601.1-201ENST00000444542 271 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RPS15AP27-201ENST00000449183 343 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AC108938.1-201ENST00000451204 136 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.5□□□□□ -2.01
SOX3P41225 RNU6-333P-201ENST00000459117 107 ntBASIC2.5□□□□□ -2.01
SOX3P41225 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.5□□□□□ -2.01
SOX3P41225 AC090525.1-201ENST00000479116 478 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AC091885.1-201ENST00000506658 268 ntBASIC2.5□□□□□ -2.01
SOX3P41225 MTND3P25-201ENST00000509243 135 ntBASIC2.5□□□□□ -2.01
SOX3P41225 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.5□□□□□ -2.01
SOX3P41225 TBCAP3-201ENST00000512475 312 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU4-29P-201ENST00000515943 174 ntBASIC2.5□□□□□ -2.01
SOX3P41225 RNU2-69P-201ENST00000516061 100 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.5□□□□□ -2.01
SOX3P41225 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.5□□□□□ -2.01
SOX3P41225 LINC00933-203ENST00000559812 219 ntBASIC2.5□□□□□ -2.01
SOX3P41225 MIR4782-201ENST00000577987 79 ntBASIC2.5□□□□□ -2.01
SOX3P41225 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.5□□□□□ -2.01
SOX3P41225 AL160394.1-201ENST00000624765 724 ntBASIC2.5□□□□□ -2.01
SOX3P41225 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 AC008669.1-201ENST00000565823 2178 ntBASIC2.5□□□□□ -2.01
SOX3P41225 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.5□□□□□ -2.01
SOX3P41225 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX3P41225 RNU6-859P-201ENST00000362728 107 ntBASIC2.49□□□□□ -2.01
SOX3P41225 SNORD3E-201ENST00000362899 217 ntBASIC2.49□□□□□ -2.01
SOX3P41225 RNU6-451P-201ENST00000362921 107 ntBASIC2.49□□□□□ -2.01
SOX3P41225 Y_RNA.256-201ENST00000364594 104 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MIR1277-201ENST00000408536 78 ntBASIC2.49□□□□□ -2.01
SOX3P41225 RNU6-607P-201ENST00000411283 108 ntBASIC2.49□□□□□ -2.01
SOX3P41225 SNRPEP10-201ENST00000420249 274 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AL627311.1-201ENST00000431514 115 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC112220.1-201ENST00000434628 355 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX3P41225 MTATP6P13-201ENST00000438531 667 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.49□□□□□ -2.01
SOX3P41225 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.49□□□□□ -2.01
SOX3P41225 HMGN2P10-201ENST00000448085 265 ntBASIC2.49□□□□□ -2.01
SOX3P41225 MTND3P16-201ENST00000452205 344 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AL109933.2-201ENST00000452651 260 ntBASIC2.49□□□□□ -2.01
SOX3P41225 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms