Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX1P28360 MIR6780A-201ENST00000615089 68 ntBASIC4.5□□□□□ -1.69
MSX1P28360 U2.21-201ENST00000637295 81 ntBASIC4.5□□□□□ -1.69
MSX1P28360 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.5□□□□□ -1.69
MSX1P28360 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
MSX1P28360 CUL1P1-201ENST00000509510 2425 ntBASIC4.5□□□□□ -1.69
MSX1P28360 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX1P28360 AC099654.7-201ENST00000635788 2127 ntBASIC4.49□□□□□ -1.69
MSX1P28360 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX1P28360 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
MSX1P28360 RNU6-793P-201ENST00000384233 104 ntBASIC4.49□□□□□ -1.69
MSX1P28360 Y_RNA.542-201ENST00000384641 111 ntBASIC4.49□□□□□ -1.69
MSX1P28360 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.49□□□□□ -1.69
MSX1P28360 TOMM22P1-201ENST00000418578 312 ntBASIC4.49□□□□□ -1.69
MSX1P28360 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX1P28360 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX1P28360 U8.19-201ENST00000459095 133 ntBASIC4.49□□□□□ -1.69
MSX1P28360 RPS23P7-201ENST00000466210 444 ntBASIC4.49□□□□□ -1.69
MSX1P28360 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.49□□□□□ -1.69
MSX1P28360 AP006289.1-201ENST00000538089 277 ntBASIC4.49□□□□□ -1.69
MSX1P28360 AC091042.1-201ENST00000579213 173 ntBASIC4.49□□□□□ -1.69
MSX1P28360 MIR3667-201ENST00000581025 74 ntBASIC4.49□□□□□ -1.69
MSX1P28360 SNRPGP15-201ENST00000600149 222 ntBASIC4.49□□□□□ -1.69
MSX1P28360 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.49□□□□□ -1.69
MSX1P28360 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX1P28360 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX1P28360 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
MSX1P28360 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
MSX1P28360 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
MSX1P28360 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
MSX1P28360 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX1P28360 AC079741.1-201ENST00000321498 212 ntBASIC4.48□□□□□ -1.69
MSX1P28360 RNU6-1285P-201ENST00000363480 105 ntBASIC4.48□□□□□ -1.69
MSX1P28360 RNA5SP505-201ENST00000364748 108 ntBASIC4.48□□□□□ -1.69
MSX1P28360 RNU1-100P-201ENST00000365255 165 ntBASIC4.48□□□□□ -1.69
MSX1P28360 SNORA11-201ENST00000408789 128 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.48□□□□□ -1.69
MSX1P28360 TBCAP1-201ENST00000436520 327 ntBASIC4.48□□□□□ -1.69
MSX1P28360 RPL23AP58-201ENST00000440453 469 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX1P28360 snoU13.4-201ENST00000458916 104 ntBASIC4.48□□□□□ -1.69
MSX1P28360 RN7SL385P-201ENST00000468873 276 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AC011276.1-201ENST00000469688 323 ntBASIC4.48□□□□□ -1.69
MSX1P28360 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
MSX1P28360 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX1P28360 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX1P28360 SNORA74C-1-201ENST00000580726 201 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AC069294.1-201ENST00000608397 350 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AL359198.2-201ENST00000611836 194 ntBASIC4.48□□□□□ -1.69
MSX1P28360 AL078604.3-201ENST00000615580 211 ntBASIC4.48□□□□□ -1.69
MSX1P28360 MIR6134-201ENST00000617606 109 ntBASIC4.48□□□□□ -1.69
MSX1P28360 TUG1_4.1-201ENST00000619464 181 ntBASIC4.48□□□□□ -1.69
MSX1P28360 MIR3658-201ENST00000636291 56 ntBASIC4.48□□□□□ -1.69
MSX1P28360 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.48□□□□□ -1.69
MSX1P28360 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.48□□□□□ -1.69
MSX1P28360 MAPK10-320ENST00000641462 6696 ntBASIC4.48□□□□□ -1.69
MSX1P28360 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.48□□□□□ -1.69
MSX1P28360 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
MSX1P28360 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 AL356489.2-201ENST00000566968 3528 ntBASIC4.47□□□□□ -1.69
MSX1P28360 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX1P28360 AC139713.2-214ENST00000642059 1811 ntBASIC4.47□□□□□ -1.69
MSX1P28360 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSX1P28360 RNU6-778P-201ENST00000363269 103 ntBASIC4.47□□□□□ -1.69
MSX1P28360 Y_RNA.329-201ENST00000365209 107 ntBASIC4.47□□□□□ -1.69
MSX1P28360 SNORA62-201ENST00000365493 153 ntBASIC4.47□□□□□ -1.69
MSX1P28360 RPS20P14-201ENST00000412545 360 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.47□□□□□ -1.69
MSX1P28360 RPL26P27-201ENST00000414397 437 ntBASIC4.47□□□□□ -1.69
MSX1P28360 RPS12P23-201ENST00000419579 400 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AC012306.1-201ENST00000423267 114 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AC125238.1-201ENST00000448842 249 ntBASIC4.47□□□□□ -1.69
MSX1P28360 RN7SL354P-201ENST00000469282 294 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX1P28360 ENPP7P9-201ENST00000514456 627 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AC021269.2-201ENST00000532318 330 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.47□□□□□ -1.69
MSX1P28360 AC209154.1-201ENST00000582156 337 ntBASIC4.47□□□□□ -1.69
MSX1P28360 FTX_3.1-201ENST00000610451 147 ntBASIC4.47□□□□□ -1.69
MSX1P28360 MIR7703-201ENST00000620784 77 ntBASIC4.47□□□□□ -1.69
MSX1P28360 AL023881.1-201ENST00000621088 301 ntBASIC4.47□□□□□ -1.69
MSX1P28360 MIR3674-201ENST00000636576 68 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms