Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MIR506-201ENST00000384998 124 ntBASIC-0.3□□□□□ -2.46
VCANP13611 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC-0.3□□□□□ -2.46
VCANP13611 MTCO2P12-201ENST00000427426 682 ntBASIC-0.3□□□□□ -2.46
VCANP13611 AC004865.1-201ENST00000442276 1003 ntBASIC-0.3□□□□□ -2.46
VCANP13611 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC-0.3□□□□□ -2.46
VCANP13611 AC092001.1-201ENST00000453012 261 ntBASIC-0.3□□□□□ -2.46
VCANP13611 TRGVB-201ENST00000453257 471 ntBASIC-0.3□□□□□ -2.46
VCANP13611 VBP1-203ENST00000535916 944 ntTSL 2 BASIC-0.3□□□□□ -2.46
VCANP13611 MGST1-215ENST00000540056 546 ntTSL 3 BASIC-0.3□□□□□ -2.46
VCANP13611 MIR4324-201ENST00000584846 72 ntBASIC-0.3□□□□□ -2.46
VCANP13611 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC-0.3□□□□□ -2.46
VCANP13611 MIR4431-201ENST00000579990 94 ntBASIC-0.31□□□□□ -2.46
VCANP13611 AC069304.2-201ENST00000605154 435 ntBASIC-0.31□□□□□ -2.46
VCANP13611 AP000238.1-201ENST00000608759 426 ntBASIC-0.31□□□□□ -2.46
VCANP13611 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC-0.31□□□□□ -2.46
VCANP13611 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
VCANP13611 SNORD75.1-201ENST00000408373 60 ntBASIC-0.31□□□□□ -2.46
VCANP13611 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC-0.31□□□□□ -2.46
VCANP13611 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
VCANP13611 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.31□□□□□ -2.46
VCANP13611 RNU6-952P-201ENST00000391164 108 ntBASIC-0.31□□□□□ -2.46
VCANP13611 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC-0.31□□□□□ -2.46
VCANP13611 AP001328.1-201ENST00000528550 176 ntBASIC-0.31□□□□□ -2.46
VCANP13611 AC087588.1-201ENST00000462203 316 ntBASIC-0.32□□□□□ -2.46
VCANP13611 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.32□□□□□ -2.46
VCANP13611 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.32□□□□□ -2.46
VCANP13611 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC-0.32□□□□□ -2.46
VCANP13611 ZNF663P-202ENST00000641770 1131 ntBASIC-0.32□□□□□ -2.46
VCANP13611 RNU6-945P-201ENST00000383947 107 ntBASIC-0.32□□□□□ -2.46
VCANP13611 AL589655.1-201ENST00000405398 482 ntBASIC-0.32□□□□□ -2.46
VCANP13611 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC-0.32□□□□□ -2.46
VCANP13611 EIF4EP4-201ENST00000424916 578 ntBASIC-0.32□□□□□ -2.46
VCANP13611 MTCO1P18-201ENST00000455518 1419 ntBASIC-0.32□□□□□ -2.46
VCANP13611 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.32□□□□□ -2.46
VCANP13611 HSPA8P13-201ENST00000523715 472 ntBASIC-0.32□□□□□ -2.46
VCANP13611 RNU1-105P-201ENST00000363470 161 ntBASIC-0.32□□□□□ -2.46
VCANP13611 RNU6-40P-201ENST00000384254 107 ntBASIC-0.32□□□□□ -2.46
VCANP13611 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC-0.32□□□□□ -2.46
VCANP13611 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC-0.32□□□□□ -2.46
VCANP13611 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC-0.32□□□□□ -2.46
VCANP13611 MIR605-201ENST00000385078 83 ntBASIC-0.33□□□□□ -2.46
VCANP13611 AC118273.2-201ENST00000532092 465 ntBASIC-0.33□□□□□ -2.46
VCANP13611 AC138627.2-201ENST00000624202 601 ntBASIC-0.33□□□□□ -2.46
VCANP13611 MIR19B1-201ENST00000384829 87 ntBASIC-0.33□□□□□ -2.46
VCANP13611 USP9YP21-201ENST00000420603 432 ntBASIC-0.33□□□□□ -2.46
VCANP13611 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC-0.33□□□□□ -2.46
VCANP13611 CETN4P-201ENST00000432407 469 ntBASIC-0.33□□□□□ -2.46
VCANP13611 RPL7P43-201ENST00000478876 753 ntBASIC-0.33□□□□□ -2.46
VCANP13611 AC023194.1-201ENST00000493084 308 ntBASIC-0.33□□□□□ -2.46
VCANP13611 RNA5SP180-201ENST00000516181 101 ntBASIC-0.33□□□□□ -2.46
VCANP13611 AC093023.1-201ENST00000547375 507 ntBASIC-0.33□□□□□ -2.46
VCANP13611 RN7SKP158-201ENST00000410453 326 ntBASIC-0.34□□□□□ -2.46
VCANP13611 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC-0.34□□□□□ -2.46
VCANP13611 AC092354.1-201ENST00000606057 376 ntBASIC-0.34□□□□□ -2.46
VCANP13611 SNORA1.1-201ENST00000364671 133 ntBASIC-0.34□□□□□ -2.46
VCANP13611 SNORA12.1-201ENST00000390873 148 ntBASIC-0.34□□□□□ -2.46
VCANP13611 SNORD89-201ENST00000390981 114 ntBASIC-0.34□□□□□ -2.46
VCANP13611 AC010631.1-201ENST00000474150 156 ntBASIC-0.34□□□□□ -2.46
VCANP13611 SNORA68.3-201ENST00000515906 83 ntBASIC-0.34□□□□□ -2.46
VCANP13611 RNU6-50P-201ENST00000362356 103 ntBASIC-0.34□□□□□ -2.46
VCANP13611 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.34□□□□□ -2.46
VCANP13611 MIR607-201ENST00000385241 96 ntBASIC-0.34□□□□□ -2.46
VCANP13611 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC-0.34□□□□□ -2.46
VCANP13611 HMGB1P35-201ENST00000503360 598 ntBASIC-0.34□□□□□ -2.46
VCANP13611 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC-0.34□□□□□ -2.46
VCANP13611 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.34□□□□□ -2.46
VCANP13611 AC090953.1-201ENST00000604305 1092 ntBASIC-0.34□□□□□ -2.46
VCANP13611 AC040896.1-201ENST00000613819 479 ntBASIC-0.34□□□□□ -2.46
VCANP13611 RN7SL660P-201ENST00000614852 299 ntBASIC-0.34□□□□□ -2.46
VCANP13611 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.35□□□□□ -2.47
VCANP13611 CALM2P3-201ENST00000400429 449 ntBASIC-0.35□□□□□ -2.47
VCANP13611 MTND4LP12-201ENST00000448237 295 ntBASIC-0.35□□□□□ -2.47
VCANP13611 SNORD116-28-201ENST00000516123 91 ntBASIC-0.35□□□□□ -2.47
VCANP13611 CENPF-206ENST00000614578 528 ntTSL 5 BASIC-0.35□□□□□ -2.47
VCANP13611 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC-0.35□□□□□ -2.47
VCANP13611 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC-0.35□□□□□ -2.47
VCANP13611 GAPDHP17-201ENST00000449858 1001 ntBASIC-0.35□□□□□ -2.47
VCANP13611 RPS29P15-201ENST00000458329 171 ntBASIC-0.35□□□□□ -2.47
VCANP13611 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.35□□□□□ -2.47
VCANP13611 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC-0.35□□□□□ -2.47
VCANP13611 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC-0.35□□□□□ -2.47
VCANP13611 AC018638.7-201ENST00000605836 1114 ntBASIC-0.35□□□□□ -2.47
VCANP13611 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC-0.35□□□□□ -2.47
VCANP13611 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.36□□□□□ -2.47
VCANP13611 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.36□□□□□ -2.47
VCANP13611 RNU6-929P-201ENST00000384429 107 ntBASIC-0.36□□□□□ -2.47
VCANP13611 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC-0.36□□□□□ -2.47
VCANP13611 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC-0.36□□□□□ -2.47
VCANP13611 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC-0.36□□□□□ -2.47
VCANP13611 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 AL359212.1-201ENST00000556608 614 ntBASIC-0.36□□□□□ -2.47
VCANP13611 AC090616.5-202ENST00000582111 297 ntBASIC-0.36□□□□□ -2.47
VCANP13611 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 RNU6-546P-201ENST00000383991 107 ntBASIC-0.36□□□□□ -2.47
VCANP13611 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 AC135999.1-201ENST00000478962 479 ntBASIC-0.36□□□□□ -2.47
VCANP13611 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC-0.36□□□□□ -2.47
VCANP13611 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.36□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms