Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU6-82P-201ENST00000363970 107 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RNA5SP387-201ENST00000364226 106 ntBASIC2.95□□□□□ -1.94
LDB3O75112 CISD1P1-201ENST00000393907 327 ntBASIC2.95□□□□□ -1.94
LDB3O75112 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.95□□□□□ -1.94
LDB3O75112 AC074085.1-201ENST00000413598 418 ntBASIC2.95□□□□□ -1.94
LDB3O75112 ARL5AP1-201ENST00000418991 388 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RPL7P37-201ENST00000425095 738 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC006946.1-201ENST00000429106 328 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC007919.1-201ENST00000429380 217 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AL137792.2-201ENST00000443484 235 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC104058.1-201ENST00000448028 297 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.95□□□□□ -1.94
LDB3O75112 MIR2053-201ENST00000459295 91 ntBASIC2.95□□□□□ -1.94
LDB3O75112 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.95□□□□□ -1.94
LDB3O75112 AL049830.2-201ENST00000480072 201 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RPS15AP34-201ENST00000487776 387 ntBASIC2.95□□□□□ -1.94
LDB3O75112 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.95□□□□□ -1.94
LDB3O75112 RPS27P27-201ENST00000498779 255 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC021146.2-201ENST00000504736 556 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC006445.2-201ENST00000510061 472 ntBASIC2.95□□□□□ -1.94
LDB3O75112 PTP4A1P4-201ENST00000512479 322 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RNA5SP217-201ENST00000515959 91 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RNU6-914P-201ENST00000516749 109 ntBASIC2.95□□□□□ -1.94
LDB3O75112 SNORD59.2-201ENST00000516873 68 ntBASIC2.95□□□□□ -1.94
LDB3O75112 RNA5SP471-201ENST00000516971 106 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.95□□□□□ -1.94
LDB3O75112 IMMP1LP2-201ENST00000552954 492 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC007151.1-201ENST00000572774 483 ntBASIC2.95□□□□□ -1.94
LDB3O75112 MIR5692C1-201ENST00000585309 91 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.95□□□□□ -1.94
LDB3O75112 AC008737.2-201ENST00000599446 118 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AL161798.1-201ENST00000604630 131 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AL121655.1-201ENST00000605811 308 ntBASIC2.95□□□□□ -1.94
LDB3O75112 MIR15A-201ENST00000607334 83 ntBASIC2.95□□□□□ -1.94
LDB3O75112 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.95□□□□□ -1.94
LDB3O75112 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.95□□□□□ -1.94
LDB3O75112 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.95□□□□□ -1.94
LDB3O75112 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.95□□□□□ -1.94
LDB3O75112 AC007785.2-201ENST00000598627 1916 ntBASIC2.95□□□□□ -1.94
LDB3O75112 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.95□□□□□ -1.94
LDB3O75112 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
LDB3O75112 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
LDB3O75112 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.94□□□□□ -1.94
LDB3O75112 Y_RNA.197-201ENST00000364004 102 ntBASIC2.94□□□□□ -1.94
LDB3O75112 RNU6-512P-201ENST00000364438 103 ntBASIC2.94□□□□□ -1.94
LDB3O75112 Y_RNA.245-201ENST00000364493 95 ntBASIC2.94□□□□□ -1.94
LDB3O75112 RNU6-715P-201ENST00000365204 103 ntBASIC2.94□□□□□ -1.94
LDB3O75112 SNORD116-11-201ENST00000383882 92 ntBASIC2.94□□□□□ -1.94
LDB3O75112 RNU6-1013P-201ENST00000384180 107 ntBASIC2.94□□□□□ -1.94
LDB3O75112 Y_RNA.534-201ENST00000384599 112 ntBASIC2.94□□□□□ -1.94
LDB3O75112 RNU6-310P-201ENST00000384655 107 ntBASIC2.94□□□□□ -1.94
LDB3O75112 EIF4E2P1-201ENST00000393781 255 ntBASIC2.94□□□□□ -1.94
LDB3O75112 Y_RNA.646-201ENST00000410980 101 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.94□□□□□ -1.94
LDB3O75112 RPL32P35-201ENST00000415214 394 ntBASIC2.94□□□□□ -1.94
LDB3O75112 RPS15AP6-201ENST00000420703 385 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AL160275.3-201ENST00000423876 471 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 MTND3P2-201ENST00000438452 342 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 AC125238.1-201ENST00000448842 249 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 RPL7P5-201ENST00000471472 736 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 AC008526.1-201ENST00000509149 338 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.94□□□□□ -1.94
LDB3O75112 RNU2-69P-201ENST00000516061 100 ntBASIC2.94□□□□□ -1.94
LDB3O75112 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.94□□□□□ -1.94
LDB3O75112 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.94□□□□□ -1.94
LDB3O75112 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 TRAV28-201ENST00000557548 323 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 AC006504.6-201ENST00000590142 199 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC136443.5-201ENST00000603741 370 ntBASIC2.94□□□□□ -1.94
LDB3O75112 YPEL5P2-201ENST00000605553 359 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AC099506.2-201ENST00000623074 221 ntBASIC2.94□□□□□ -1.94
LDB3O75112 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.94□□□□□ -1.94
LDB3O75112 MIR3651-201ENST00000630427 90 ntBASIC2.94□□□□□ -1.94
LDB3O75112 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.94□□□□□ -1.94
LDB3O75112 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
LDB3O75112 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
LDB3O75112 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LDB3O75112 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
LDB3O75112 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LDB3O75112 Y_RNA.148-201ENST00000363557 117 ntBASIC2.93□□□□□ -1.94
LDB3O75112 Y_RNA.187-201ENST00000363918 113 ntBASIC2.93□□□□□ -1.94
LDB3O75112 Y_RNA.202-201ENST00000364083 110 ntBASIC2.93□□□□□ -1.94
LDB3O75112 RNU6-1303P-201ENST00000364841 107 ntBASIC2.93□□□□□ -1.94
LDB3O75112 SNORD67-201ENST00000390833 111 ntBASIC2.93□□□□□ -1.94
LDB3O75112 MIR450B-201ENST00000401182 78 ntBASIC2.93□□□□□ -1.94
LDB3O75112 AL160004.2-201ENST00000432935 350 ntBASIC2.93□□□□□ -1.94
LDB3O75112 PIGFP3-201ENST00000441918 722 ntBASIC2.93□□□□□ -1.94
LDB3O75112 RPS24P13-201ENST00000442520 397 ntBASIC2.93□□□□□ -1.94
LDB3O75112 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms