Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.29□□□□□ -2.04
SDC3O75056 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC3O75056 RNU6-685P-201ENST00000517088 95 ntBASIC2.29□□□□□ -2.04
SDC3O75056 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC3O75056 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC3O75056 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC3O75056 MIR98-201ENST00000606724 119 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AL137847.3-201ENST00000611521 109 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AC024940.5-201ENST00000622889 474 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AC093648.1-201ENST00000623546 606 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AL157786.1-207ENST00000627771 695 ntBASIC2.29□□□□□ -2.04
SDC3O75056 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SDC3O75056 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC3O75056 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SDC3O75056 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SDC3O75056 AL109809.4-201ENST00000603520 2185 ntBASIC2.28□□□□□ -2.04
SDC3O75056 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC3O75056 RNU6-486P-201ENST00000363116 107 ntBASIC2.28□□□□□ -2.04
SDC3O75056 RNU6-179P-201ENST00000363350 107 ntBASIC2.28□□□□□ -2.04
SDC3O75056 RNU1-52P-201ENST00000384190 164 ntBASIC2.28□□□□□ -2.04
SDC3O75056 RNU6-74P-201ENST00000384235 107 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 AC003685.2-201ENST00000422795 395 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.28□□□□□ -2.04
SDC3O75056 KATNBL1P3-201ENST00000443475 909 ntBASIC2.28□□□□□ -2.04
SDC3O75056 NDUFB1P2-201ENST00000449477 176 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 AL139109.1-201ENST00000455491 297 ntBASIC2.28□□□□□ -2.04
SDC3O75056 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 RPL9P6-201ENST00000492764 598 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC022493.1-201ENST00000492984 337 ntBASIC2.28□□□□□ -2.04
SDC3O75056 RPL22P13-201ENST00000493291 347 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.28□□□□□ -2.04
SDC3O75056 SNORD27.1-201ENST00000516319 72 ntBASIC2.28□□□□□ -2.04
SDC3O75056 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 MTCYBP20-201ENST00000524239 1129 ntBASIC2.28□□□□□ -2.04
SDC3O75056 RANP3-201ENST00000530970 276 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 AC105245.1-201ENST00000581934 244 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC098848.2-201ENST00000588023 330 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.28□□□□□ -2.04
SDC3O75056 BNIP3P10-201ENST00000605360 577 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC126118.1-201ENST00000607744 628 ntBASIC2.28□□□□□ -2.04
SDC3O75056 AC099842.1-201ENST00000619919 596 ntBASIC2.28□□□□□ -2.04
SDC3O75056 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.28□□□□□ -2.04
SDC3O75056 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
SDC3O75056 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
SDC3O75056 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
SDC3O75056 AL139276.1-201ENST00000311910 1001 ntBASIC2.27□□□□□ -2.05
SDC3O75056 MIR412-201ENST00000362142 91 ntBASIC2.27□□□□□ -2.05
SDC3O75056 Y_RNA.367-201ENST00000365544 101 ntBASIC2.27□□□□□ -2.05
SDC3O75056 RNU6-898P-201ENST00000365627 104 ntBASIC2.27□□□□□ -2.05
SDC3O75056 RNU6-348P-201ENST00000384386 107 ntBASIC2.27□□□□□ -2.05
SDC3O75056 SNORA41-201ENST00000384675 132 ntBASIC2.27□□□□□ -2.05
SDC3O75056 SNORA80E-201ENST00000384744 137 ntBASIC2.27□□□□□ -2.05
SDC3O75056 CISD1P1-201ENST00000393907 327 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.27□□□□□ -2.05
SDC3O75056 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.27□□□□□ -2.05
SDC3O75056 CALM2P2-201ENST00000428512 440 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC133104.1-201ENST00000429100 218 ntBASIC2.27□□□□□ -2.05
SDC3O75056 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.27□□□□□ -2.05
SDC3O75056 AC004383.1-201ENST00000438135 289 ntBASIC2.27□□□□□ -2.05
SDC3O75056 BTF3P15-201ENST00000455606 336 ntBASIC2.27□□□□□ -2.05
SDC3O75056 RPL31P3-201ENST00000458430 332 ntBASIC2.27□□□□□ -2.05
SDC3O75056 RNU6-956P-201ENST00000458868 103 ntBASIC2.27□□□□□ -2.05
SDC3O75056 Y_RNA.638-201ENST00000459374 113 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC080013.2-201ENST00000460866 323 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC023194.1-201ENST00000493084 308 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC116655.1-201ENST00000508324 901 ntBASIC2.27□□□□□ -2.05
SDC3O75056 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.27□□□□□ -2.05
SDC3O75056 HMGB3P3-201ENST00000510526 400 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.27□□□□□ -2.05
SDC3O75056 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SDC3O75056 SNORA25.11-201ENST00000515935 105 ntBASIC2.27□□□□□ -2.05
SDC3O75056 RNU6-237P-201ENST00000515985 71 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AL356057.1-201ENST00000533798 831 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC040904.1-201ENST00000590850 223 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AL158032.1-201ENST00000605401 106 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC087045.1-201ENST00000605856 382 ntBASIC2.27□□□□□ -2.05
SDC3O75056 AC072046.2-201ENST00000618366 268 ntBASIC2.27□□□□□ -2.05
SDC3O75056 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SDC3O75056 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.27□□□□□ -2.05
SDC3O75056 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.26□□□□□ -2.05
SDC3O75056 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
SDC3O75056 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.26□□□□□ -2.05
SDC3O75056 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
SDC3O75056 RNA5SP125-201ENST00000364843 120 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORD115-7-201ENST00000365306 82 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORD116-9-201ENST00000384000 95 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORA75-201ENST00000384158 137 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORD116-3-201ENST00000384287 95 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORD116-7-201ENST00000384404 95 ntBASIC2.26□□□□□ -2.05
SDC3O75056 SNORD116-5-201ENST00000384462 95 ntBASIC2.26□□□□□ -2.05
SDC3O75056 RNU6-748P-201ENST00000384648 107 ntBASIC2.26□□□□□ -2.05
SDC3O75056 MIR454-201ENST00000390180 115 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms