Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA3O43365 RNU1-76P-201ENST00000362903 159 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 SNORD74.4-201ENST00000364129 80 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 SNORA62.3-201ENST00000365110 153 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 Y_RNA.483-201ENST00000384380 101 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXA3O43365 AL356968.1-201ENST00000416622 474 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 TMEM167AP1-201ENST00000423409 219 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA3O43365 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 RPS29P7-201ENST00000439662 171 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC243964.1-201ENST00000441814 261 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 RPL21P104-201ENST00000464143 478 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC091153.1-201ENST00000466297 402 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC146944.2-203ENST00000502493 354 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC139495.1-202ENST00000513164 354 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 Y_RNA.706-201ENST00000516933 99 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC023157.2-201ENST00000540596 141 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA3O43365 MIR6134-201ENST00000617606 109 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 MIR4727-201ENST00000622232 55 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AC130454.1-201ENST00000622948 401 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 U6.104-201ENST00000637979 90 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXA3O43365 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA3O43365 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 AC233981.2-201ENST00000611524 1614 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 AL672296.1-201ENST00000427780 2158 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA3O43365 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA3O43365 Y_RNA.27-201ENST00000362540 103 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 Y_RNA.183-201ENST00000363882 113 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RNU6-130P-201ENST00000411112 103 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA3O43365 Z82188.1-201ENST00000436709 154 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RPL23AP22-201ENST00000437556 453 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 CYCSP32-201ENST00000440548 321 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RPEP5-201ENST00000441137 268 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AL031659.1-201ENST00000447075 539 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AC125238.1-201ENST00000448842 249 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 LINC01399-202ENST00000458450 244 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 snoU13.30-201ENST00000458951 104 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AC084357.1-201ENST00000473404 255 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RNU6-928P-201ENST00000516876 104 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA3O43365 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 AC006064.5-201ENST00000541782 248 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA3O43365 AL442163.3-201ENST00000554110 156 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RPL23AP97-201ENST00000568955 471 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 AC022655.2-201ENST00000577280 318 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 MIR4429-201ENST00000580105 73 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 RPL23AP78-201ENST00000599928 470 ntBASIC3.36□□□□□ -1.87
HOXA3O43365 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA3O43365 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA3O43365 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA3O43365 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA3O43365 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA3O43365 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
HOXA3O43365 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA3O43365 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.35□□□□□ -1.87
HOXA3O43365 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA3O43365 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA3O43365 Y_RNA.257-201ENST00000364596 102 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RNU4-9P-201ENST00000364951 139 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA3O43365 Y_RNA.458-201ENST00000384240 102 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RNU6-1035P-201ENST00000384477 107 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 SNORD116-20-201ENST00000384529 92 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P75-201ENST00000396599 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P17-201ENST00000397467 475 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P28-201ENST00000401418 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RNA5SP44-201ENST00000410446 133 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RNU6-1245P-201ENST00000411130 106 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 CYCSP19-201ENST00000411715 316 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RAB9AP3-201ENST00000412737 573 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 NDUFS5P4-201ENST00000412983 318 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AL590556.1-201ENST00000423231 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC007389.2-201ENST00000434630 306 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RAB9AP1-201ENST00000449393 573 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RNA5SP246-201ENST00000458909 119 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P11-201ENST00000461458 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P39-201ENST00000463605 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RN7SL542P-201ENST00000467147 294 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC087190.1-201ENST00000484462 480 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC107032.1-201ENST00000485945 480 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC132942.1-201ENST00000486753 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC093591.1-201ENST00000491435 481 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL23AP75-201ENST00000491601 451 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 RPL21P16-201ENST00000495531 483 ntBASIC3.35□□□□□ -1.87
HOXA3O43365 AC006499.6-201ENST00000511169 607 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms