Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MIR3169-201ENST00000578032 83 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 MIR4513-201ENST00000581077 86 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 AC060771.1-201ENST00000582031 164 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 AC103987.3-201ENST00000582071 292 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.92□□□□□ -2.26
HMGB3O15347 AC093875.1-201ENST00000623688 504 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 AC231657.1-201ENST00000624313 397 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 AC008993.2-201ENST00000631744 806 ntBASIC0.92□□□□□ -2.26
HMGB3O15347 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
HMGB3O15347 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
HMGB3O15347 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.91□□□□□ -2.26
HMGB3O15347 RNU6-468P-201ENST00000384003 109 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 SNORA40.6-201ENST00000391153 128 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 SNORA40C-201ENST00000391285 128 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 MTCO1P56-201ENST00000401674 224 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 CST2P1-201ENST00000425770 87 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC0.91□□□□□ -2.26
HMGB3O15347 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC0.91□□□□□ -2.26
HMGB3O15347 MED28P2-201ENST00000475771 317 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 RPS3AP22-201ENST00000488297 769 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.91□□□□□ -2.26
HMGB3O15347 RPL39P36-201ENST00000490784 156 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 SNORA31.19-201ENST00000517079 126 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.91□□□□□ -2.26
HMGB3O15347 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.91□□□□□ -2.26
HMGB3O15347 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC0.91□□□□□ -2.26
HMGB3O15347 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.91□□□□□ -2.26
HMGB3O15347 AC104072.1-201ENST00000568817 668 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 AL355802.3-201ENST00000607571 545 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 AL078604.3-201ENST00000615580 211 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.91□□□□□ -2.26
HMGB3O15347 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0.91□□□□□ -2.26
HMGB3O15347 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.9□□□□□ -2.26
HMGB3O15347 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
HMGB3O15347 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.9□□□□□ -2.27
HMGB3O15347 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
HMGB3O15347 RNU6-112P-201ENST00000363599 104 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 RNU6-236P-201ENST00000363886 106 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 RNA5SP493-201ENST00000364115 91 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 RNU6-487P-201ENST00000365430 104 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 Y_RNA.408-201ENST00000383987 102 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 SNORA70B-201ENST00000384210 135 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 RNU6-843P-201ENST00000384454 104 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 MIR1267-201ENST00000408723 78 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.9□□□□□ -2.27
HMGB3O15347 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.9□□□□□ -2.27
HMGB3O15347 AL592045.1-201ENST00000429867 352 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 RPL23AP35-201ENST00000451906 501 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.9□□□□□ -2.27
HMGB3O15347 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 AC024589.1-201ENST00000512207 263 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 DEFB131D-201ENST00000526803 184 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC0.9□□□□□ -2.27
HMGB3O15347 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 AL161670.1-201ENST00000554348 137 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.9□□□□□ -2.27
HMGB3O15347 AL731537.2-201ENST00000561565 951 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 BNIP3P22-201ENST00000593399 556 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 VN1R83P-201ENST00000595685 445 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 BNIP3P9-201ENST00000603714 553 ntBASIC0.9□□□□□ -2.27
HMGB3O15347 NF1-214ENST00000490416 1329 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
HMGB3O15347 MTND5P9-201ENST00000503854 1755 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RNA5SP327-201ENST00000362494 101 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RNU6-23P-201ENST00000363283 107 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RNU6-414P-201ENST00000363705 104 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 SNORA62.1-201ENST00000364287 154 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 SNORD14B-201ENST00000364533 90 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RNU6-166P-201ENST00000384371 107 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 MIR513A1-201ENST00000385138 129 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
HMGB3O15347 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
HMGB3O15347 CBX3P9-201ENST00000402326 552 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC0.89□□□□□ -2.27
HMGB3O15347 AL022238.1-201ENST00000442557 355 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 AL078601.1-201ENST00000444542 271 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AL096829.2-201ENST00000446582 742 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
HMGB3O15347 RNU7-59P-201ENST00000459101 61 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RPL30P6-201ENST00000475925 342 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 RPL26P26-201ENST00000480251 434 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AP001025.1-201ENST00000486139 332 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AL133373.1-201ENST00000497098 94 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.89□□□□□ -2.27
HMGB3O15347 AC098799.1-201ENST00000504752 800 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 YWHAEP4-201ENST00000505390 198 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AC108078.1-201ENST00000508073 725 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.89□□□□□ -2.27
HMGB3O15347 RNU6-965P-201ENST00000516721 96 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AP006587.4-201ENST00000526053 529 ntBASIC0.89□□□□□ -2.27
HMGB3O15347 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC0.89□□□□□ -2.27
HMGB3O15347 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms