Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 RBMY2UP-201ENST00000453474 324 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC116337.1-201ENST00000509680 687 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 SNORA67.7-201ENST00000516664 135 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC109479.2-201ENST00000517842 174 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC006557.5-201ENST00000603126 811 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC064836.2-201ENST00000609491 462 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 AC068831.7-201ENST00000616954 363 ntBASIC3.53□□□□□ -1.84
PCDHA3Q9Y5H8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-72P-201ENST00000384285 79 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 SNORD116-29-201ENST00000384516 83 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-601P-201ENST00000384540 107 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MIR518D-201ENST00000385014 87 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AL445529.1-201ENST00000398713 389 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MTCYBP4-201ENST00000401524 249 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC245054.2-201ENST00000415639 319 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC245291.1-201ENST00000419501 328 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 SETP5-201ENST00000437270 562 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RPL23AP45-201ENST00000476406 468 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RNU1-143P-201ENST00000516296 146 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 SNORA64.4-201ENST00000516632 81 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 APOOP3-201ENST00000536787 586 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AL391261.3-201ENST00000557194 520 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MIR4429-201ENST00000580105 73 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 MIR5690-201ENST00000583739 73 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC008121.1-201ENST00000603244 268 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 U1.23-201ENST00000610293 146 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AL121772.2-201ENST00000614331 297 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 RNU1-68P-201ENST00000615382 146 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 U1.39-201ENST00000621562 146 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 AC073308.1-201ENST00000623696 305 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 SCARNA4-202ENST00000625402 129 ntBASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
PCDHA3Q9Y5H8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNA5SP197-201ENST00000363357 119 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 SNORD56.3-201ENST00000363507 71 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 SNORA73.2-201ENST00000364946 201 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 XGY1-201ENST00000381172 446 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 Y_RNA.419-201ENST00000384041 102 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 SNORD17-201ENST00000390930 237 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNY4P36-201ENST00000391116 96 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 U3.37-201ENST00000408528 213 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 SYF2P2-201ENST00000417620 583 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU7-152P-201ENST00000458982 64 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-1037P-201ENST00000459571 107 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AC128713.1-201ENST00000471495 306 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RPS27AP10-201ENST00000496103 208 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU1-95P-201ENST00000516357 160 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-1016P-201ENST00000516689 94 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU1-128P-201ENST00000516704 160 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 RNU1-54P-201ENST00000517181 120 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 IGKV2-26-201ENST00000518305 343 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AL160281.1-201ENST00000605307 311 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 MIR6128-201ENST00000615528 109 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 MIR6134-201ENST00000617606 109 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 MTND4LP32-201ENST00000636111 270 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 AC009093.8-201ENST00000641769 292 ntBASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PCDHA3Q9Y5H8 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 ZNF826P-207ENST00000622273 1910 ntBASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 RNA5SP383-201ENST00000362934 120 ntBASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-1188P-201ENST00000363795 107 ntBASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-1106P-201ENST00000390845 107 ntBASIC3.5□□□□□ -1.85
PCDHA3Q9Y5H8 RNU6-370P-201ENST00000411008 104 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms