Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AC026784.1-201ENST00000507986 352 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 RNU6-377P-201ENST00000515965 102 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MIR3186-201ENST00000577404 85 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC062037.2-201ENST00000610137 73 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MIR8058-201ENST00000615737 89 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MIR7702-201ENST00000621931 59 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 MTND5P7-201ENST00000413558 1798 ntBASIC4.83□□□□□ -1.64
BRPF3Q9ULD4 AC007256.1-201ENST00000392253 2765 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 RNU6-874P-201ENST00000362390 105 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.396-201ENST00000383949 103 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.526-201ENST00000384572 110 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 RNU6-713P-201ENST00000384761 107 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 snoU109.2-201ENST00000459316 135 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 RNU7-143P-201ENST00000516781 65 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC005476.1-201ENST00000554427 397 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 HSPE1P5-201ENST00000561489 272 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 MTND4LP5-201ENST00000605152 292 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC244205.2-202ENST00000635781 342 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 MIR6830-201ENST00000636015 70 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC006971.1-201ENST00000407916 4486 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC032011.1-201ENST00000611703 1549 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 AC027290.2-201ENST00000623210 18662 ntBASIC4.82□□□□□ -1.64
BRPF3Q9ULD4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC110774.1-201ENST00000623567 2018 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 SNORD50.1-201ENST00000362987 71 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 U3.6-201ENST00000363622 211 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 RNU5E-7P-201ENST00000365290 117 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.551-201ENST00000384661 102 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 MIR325-201ENST00000385260 98 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 SAR1AP2-201ENST00000392696 594 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 RNU6-847P-201ENST00000411115 108 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 RPL23AP46-201ENST00000438548 490 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 RN7SKP122-201ENST00000515923 296 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 RNY3P15-201ENST00000516297 97 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC005046.1-201ENST00000608515 625 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC009318.2-201ENST00000610917 651 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC092628.2-201ENST00000622492 339 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 AC090617.7-201ENST00000623952 126 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 U6.99-201ENST00000637524 83 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 MAPK10-362ENST00000641864 4484 ntBASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRPF3Q9ULD4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.276-201ENST00000364732 109 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.307-201ENST00000365022 117 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 RNU6-784P-201ENST00000384330 106 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 SNORA51.11-201ENST00000384442 131 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 MIR493-201ENST00000385254 89 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 SNORA69.1-201ENST00000390904 137 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 USP9YP16-201ENST00000430287 407 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 USP9YP23-201ENST00000455085 407 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 AL590392.1-201ENST00000604960 446 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 AC027309.3-201ENST00000623419 351 ntBASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
BRPF3Q9ULD4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RNU6-379P-201ENST00000363813 104 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RNU4-50P-201ENST00000364361 141 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RNU6-140P-201ENST00000384566 108 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RNU6-1197P-201ENST00000391183 107 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms