Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 FCF1P4-201ENST00000448326 183 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 ANP32BP2-201ENST00000454525 545 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 RN7SL585P-201ENST00000470538 280 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 RN7SL601P-201ENST00000471221 293 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AK3P2-201ENST00000507976 429 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 SNORA25.11-201ENST00000515935 105 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 RNA5SP165-201ENST00000517142 115 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 IGKV2-38-201ENST00000517443 247 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 IGHV3-76-201ENST00000522465 295 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC87Q9NVE4 AC007785.2-201ENST00000598627 1916 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.396-201ENST00000383949 103 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNU6-166P-201ENST00000384371 107 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 SNORA51.11-201ENST00000384442 131 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 MIR628-201ENST00000385229 95 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 U3.42-201ENST00000408746 214 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC007560.1-201ENST00000426912 237 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC092423.1-201ENST00000430165 186 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC092798.1-201ENST00000458542 409 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNU6-377P-201ENST00000515965 102 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNU1-103P-201ENST00000516502 125 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNU6-612P-201ENST00000516909 102 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 RNU6-1073P-201ENST00000517182 106 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC005357.1-201ENST00000588399 301 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AL390123.1-201ENST00000603216 237 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 MIR1244-1-201ENST00000612829 85 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC099506.2-201ENST00000623074 221 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AC243829.7-201ENST00000633081 225 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 MIR1244-3-201ENST00000635744 85 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 MIR1244-2-201ENST00000636449 85 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 MIR1244-4-202ENST00000636813 85 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AL773545.4-201ENST00000637262 310 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 AL513478.4-201ENST00000641636 310 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 ZNF72P-201ENST00000425869 1908 ntBASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC87Q9NVE4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 Y_RNA.461-201ENST00000384263 103 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 MT-TR-201ENST00000387439 65 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AC098614.2-201ENST00000426040 255 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 Z82210.1-201ENST00000440037 231 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 OR2AQ1P-201ENST00000451972 200 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 RNU7-169P-201ENST00000459456 61 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 RNU6-572P-201ENST00000516724 80 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 SNORA40.15-201ENST00000516884 107 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AC103996.1-201ENST00000555468 102 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AL159153.1-201ENST00000619688 317 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 AC118273.1-201ENST00000525324 3006 ntBASIC4.84□□□□□ -1.63
CCDC87Q9NVE4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC87Q9NVE4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC87Q9NVE4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
CCDC87Q9NVE4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 RNY3P11-201ENST00000364153 102 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.214-201ENST00000364201 112 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.552-201ENST00000384665 112 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 RN7SKP210-201ENST00000459176 261 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 RNU6-388P-201ENST00000517012 105 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 RNU6-389P-201ENST00000517048 105 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AC005476.1-201ENST00000554427 397 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AC005046.1-201ENST00000608515 625 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AC009318.2-201ENST00000610917 651 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 LINC00901.1-201ENST00000617252 152 ntBASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC87Q9NVE4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms