Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORD27.1-201ENST00000516319 72 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 RNU6-445P-201ENST00000516949 107 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 MTCO2P4-201ENST00000517968 247 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 OR5AL2P-201ENST00000532185 920 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC023824.2-201ENST00000566185 400 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC012213.3-201ENST00000577199 777 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC104984.5-201ENST00000586878 94 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 Z84480.1-201ENST00000605131 311 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RNU6-282P-201ENST00000365357 103 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RNU6-456P-201ENST00000384493 107 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RNU6-1179P-201ENST00000384667 107 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 MIR578-201ENST00000384828 96 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 MIR1-2-201ENST00000384961 85 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RPS4XP8-201ENST00000402039 771 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 U3.37-201ENST00000408528 213 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 Z98742.2-201ENST00000431564 187 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RPS15AP9-201ENST00000439856 381 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RNU7-182P-201ENST00000459009 62 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AP001324.2-201ENST00000461163 319 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC023141.11-201ENST00000508864 202 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 RNU6-430P-201ENST00000517078 107 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 IGLV3-17-201ENST00000519099 244 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 MIR5692A1-201ENST00000580523 69 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 MIR4775-201ENST00000581168 75 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 MIR3199-1-201ENST00000582434 88 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 ATP1B3P1-201ENST00000605365 821 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC005332.10-201ENST00000612725 619 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AL449363.1-201ENST00000617815 186 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC011155.2-201ENST00000623202 216 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC138627.2-201ENST00000624202 601 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AL359740.1-201ENST00000624340 592 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC009161.2-201ENST00000624626 138 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 SEPT14P19-203ENST00000633205 211 ntBASIC2.36□□□□□ -2.03
DDX28Q9NUL7 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
DDX28Q9NUL7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 HSPA8P4-201ENST00000511877 1920 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 SNORD3E-201ENST00000362899 217 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 SNORA62.1-201ENST00000364287 154 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 MIR9-1-201ENST00000385198 89 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RNA5SP210-201ENST00000391034 120 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 EEF1A1P40-201ENST00000412883 573 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL592148.1-201ENST00000413568 445 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 OR6C66P-201ENST00000414917 930 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC016831.2-201ENST00000417179 352 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 MORF4L1P6-201ENST00000418771 268 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 NUP35P1-201ENST00000422734 947 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 MTCO1P19-201ENST00000443487 500 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC104058.1-201ENST00000448028 297 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC132479.1-201ENST00000449160 144 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 EEF1B2P7-201ENST00000451177 676 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 C1DP4-201ENST00000455429 424 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 KLF3P2-201ENST00000465138 268 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RPL22P13-201ENST00000493291 347 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC010424.1-201ENST00000506336 297 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RNA5SP112-201ENST00000515937 99 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RNU5B-3P-201ENST00000516601 115 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL391840.1-201ENST00000571144 367 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL670379.10-201ENST00000604330 253 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL670379.9-201ENST00000605428 253 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AL021997.1-201ENST00000605757 193 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 RNU6-91P-201ENST00000607774 107 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC010678.1-201ENST00000614118 713 ntBASIC2.35□□□□□ -2.03
DDX28Q9NUL7 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
DDX28Q9NUL7 AC010378.1-201ENST00000619270 362 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms