Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR3670-2-201ENST00000582974 65 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR5092-201ENST00000583139 88 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR3670-1-201ENST00000584160 65 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR3670-3-201ENST00000584855 65 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR3670-4-201ENST00000612260 65 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 MIR6076-201ENST00000617521 113 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL589994.2-201ENST00000621124 579 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 OR4G2P-202ENST00000641004 1759 ntBASIC2.71□□□□□ -1.98
UPF3AQ9H1J1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RNU6-451P-201ENST00000362921 107 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RNU6-173P-201ENST00000364215 104 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RNU1-109P-201ENST00000383960 147 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RNY3P14-201ENST00000384309 102 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RNA5SP210-201ENST00000391034 120 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC092809.3-201ENST00000415453 231 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 ZNF90P2-204ENST00000419323 1075 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RPL30P16-201ENST00000419341 429 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 MTCYBP8-201ENST00000422855 651 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 UBE2D3P2-201ENST00000424409 445 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 HMGB1P31-201ENST00000437242 427 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 MTATP6P23-201ENST00000440153 476 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AP000705.1-201ENST00000454567 350 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RPS29P15-201ENST00000458329 171 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC006512.1-201ENST00000468816 291 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 SEM1P1-201ENST00000506694 209 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC098591.2-201ENST00000510152 315 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RN7SKP219-201ENST00000516825 296 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RN7SKP258-201ENST00000517151 304 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 MTND1P35-201ENST00000526739 508 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RPL23AP78-201ENST00000599928 470 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC008536.2-201ENST00000607284 349 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 RMST_3.1-201ENST00000611651 109 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AP001486.3-201ENST00000615334 372 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC002553.4-201ENST00000616896 331 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 AC011155.2-201ENST00000623202 216 ntBASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 FER-210ENST00000628534 558 ntTSL 5 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
UPF3AQ9H1J1 MTND5P6-201ENST00000422338 1798 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC091564.4-201ENST00000533934 2194 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL139276.1-201ENST00000311910 1001 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC073343.1-201ENST00000328239 651 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 DEFB108F-201ENST00000344638 222 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 RNU5A-1-201ENST00000362698 116 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.295-201ENST00000364918 102 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 SNORD115-7-201ENST00000365306 82 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 SNORD21-201ENST00000383953 95 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL079342.1-201ENST00000401460 267 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1068P-201ENST00000410958 103 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 DPPA3P1-201ENST00000448050 469 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC022364.2-201ENST00000457963 554 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 RNU6-261P-201ENST00000459506 102 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 GMFBP1-201ENST00000467831 427 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 RBBP4P6-201ENST00000508098 202 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC117522.1-201ENST00000509821 380 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC026436.1-201ENST00000510537 270 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 RNU6-840P-201ENST00000517275 65 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 NUTF2P8-201ENST00000604593 363 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC106900.2-201ENST00000604994 317 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL354950.2-201ENST00000617939 290 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 YWHAEP7-203ENST00000622054 312 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AC138915.1-201ENST00000565427 1685 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 CUL1P1-201ENST00000509510 2425 ntBASIC2.69□□□□□ -1.98
UPF3AQ9H1J1 AL354685.2-201ENST00000448218 1447 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MTND5P17-201ENST00000418405 1603 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms