Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.69□□□□□ -2.3
SCAPERQ9BY12 LINC00557-201ENST00000563184 1279 ntBASIC0.69□□□□□ -2.3
SCAPERQ9BY12 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.69□□□□□ -2.3
SCAPERQ9BY12 AC007490.1-201ENST00000624321 703 ntBASIC0.69□□□□□ -2.3
SCAPERQ9BY12 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.69□□□□□ -2.3
SCAPERQ9BY12 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
SCAPERQ9BY12 RNU6-271P-201ENST00000363858 105 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 AC083875.1-201ENST00000419509 405 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.68□□□□□ -2.3
SCAPERQ9BY12 RPL30P7-201ENST00000479312 323 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 NACAP3-201ENST00000552100 481 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 AC009268.1-201ENST00000561352 1203 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 AC021171.1-201ENST00000603137 706 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 AL355472.4-201ENST00000610233 626 ntBASIC0.68□□□□□ -2.3
SCAPERQ9BY12 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
SCAPERQ9BY12 RNU6-543P-201ENST00000362576 108 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 RNU11-3P-201ENST00000391111 133 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC0.67□□□□□ -2.3
SCAPERQ9BY12 RPL31P35-201ENST00000431058 377 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AL135790.2-201ENST00000437701 267 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AC073614.1-201ENST00000438690 650 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.67□□□□□ -2.3
SCAPERQ9BY12 KATNBL1P6-201ENST00000453433 915 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 RNA5SP291-201ENST00000517222 105 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AC021739.1-201ENST00000559631 174 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AC093510.2-201ENST00000562820 896 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AC005261.5-201ENST00000596280 355 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 AC092953.2-201ENST00000608000 699 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 Z69720.2-201ENST00000624755 279 ntBASIC0.67□□□□□ -2.3
SCAPERQ9BY12 OR5T3-201ENST00000303059 1023 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 MIR100-201ENST00000385259 80 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 RNA5SP501-201ENST00000410990 112 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 VN1R42P-201ENST00000424651 344 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AC000111.3-201ENST00000433478 193 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 MTCO2P20-201ENST00000437339 673 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AL035666.1-201ENST00000446195 348 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 SMURF2P1-201ENST00000514992 481 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 RNU7-40P-201ENST00000516397 64 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 RNA5SP404-201ENST00000517118 132 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 SNORA31.22-201ENST00000517204 135 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 RAB11AP2-201ENST00000545905 639 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.66□□□□□ -2.3
SCAPERQ9BY12 AC067863.3-201ENST00000624172 122 ntBASIC0.66□□□□□ -2.3
SCAPERQ9BY12 RNU5E-1-201ENST00000362477 120 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AC006512.1-201ENST00000468816 291 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AL133373.1-201ENST00000497098 94 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.65□□□□□ -2.3
SCAPERQ9BY12 CYB5AP5-201ENST00000549779 389 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AC027104.1-201ENST00000563702 681 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 HMGN1P30-201ENST00000589286 268 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AP000654.2-201ENST00000605633 586 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 AC083865.1-201ENST00000636634 831 ntBASIC0.65□□□□□ -2.3
SCAPERQ9BY12 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.65□□□□□ -2.31
SCAPERQ9BY12 RNU6-152P-201ENST00000384037 107 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 RNA5SP63-201ENST00000391225 112 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AL109755.1-201ENST00000401791 649 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC006461.1-201ENST00000412637 326 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 NDUFS5P4-201ENST00000412983 318 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 PNRC2P1-201ENST00000423940 420 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 HMGN2P9-201ENST00000476875 229 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 BOLA3P3-201ENST00000505182 232 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC109927.2-201ENST00000506416 303 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 SNORA48.9-201ENST00000516419 162 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AP006587.4-201ENST00000526053 529 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC124293.1-201ENST00000530034 493 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC090115.3-201ENST00000553218 849 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 BNIP3P23-201ENST00000599655 511 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AL671309.1-201ENST00000603750 544 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC079610.2-201ENST00000604818 690 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 GDI2P1-201ENST00000429312 1336 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 SNORA63.3-201ENST00000362682 132 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 SNORD115-3-201ENST00000363100 82 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 RNU6-1339P-201ENST00000363574 91 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 Y_RNA.412-201ENST00000384001 104 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 USP9YP19-201ENST00000412165 485 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 USP9YP13-201ENST00000417797 480 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AC097463.2-201ENST00000421074 142 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 PIGFP2-201ENST00000421400 651 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 MTCO3P2-201ENST00000457365 171 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 RPS26P55-201ENST00000471178 356 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AP001025.1-201ENST00000486139 332 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.64□□□□□ -2.31
SCAPERQ9BY12 AP003066.2-201ENST00000529375 555 ntBASIC0.64□□□□□ -2.31
SCAPERQ9BY12 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms