Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AP001486.3-201ENST00000615334 372 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 Z69908.1-201ENST00000622603 247 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AL031601.2-202ENST00000622650 282 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 FRG1KP-201ENST00000623592 341 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AL512643.1-201ENST00000635735 524 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS39Q96JC1 ELL2P3-201ENST00000457883 1602 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 OR5H15-201ENST00000383696 930 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 CIR1P3-201ENST00000405137 479 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 RPL23AP30-201ENST00000432419 501 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AL591212.2-201ENST00000433923 257 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 GPM6BP3-201ENST00000442797 145 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 BTF3P15-201ENST00000455606 336 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 RNA5SP269-201ENST00000459032 137 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 SNORD42A-201ENST00000459584 64 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC112771.1-201ENST00000463581 102 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 RPS27P21-201ENST00000486977 252 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC011005.2-201ENST00000487324 359 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 RNU7-51P-201ENST00000516560 62 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 Y_RNA.688-201ENST00000516565 95 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 RNU6-914P-201ENST00000516749 109 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 SNORA18.6-201ENST00000516792 115 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 MIR5007-201ENST00000583098 95 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC007229.1-201ENST00000590455 412 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC090578.1-201ENST00000604955 591 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 RNU6-91P-201ENST00000607774 107 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC046143.2-201ENST00000609789 160 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 MIR6766-201ENST00000622641 72 ntBASIC2.3□□□□□ -2.04
VPS39Q96JC1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
VPS39Q96JC1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC138393.1-203ENST00000327086 343 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 OR56A5-201ENST00000340110 738 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 Y_RNA.201-201ENST00000364052 96 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 RNU6-898P-201ENST00000365627 104 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 Y_RNA.534-201ENST00000384599 112 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 MIR17-201ENST00000385012 84 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 U3.40-201ENST00000408706 208 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 EDDM3CP-201ENST00000415977 425 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL160275.3-201ENST00000423876 471 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 FABP5P13-201ENST00000452144 328 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC126389.1-201ENST00000477436 290 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 RBBP4P6-201ENST00000508098 202 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 Y_RNA.695-201ENST00000516715 107 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 RNU2-19P-201ENST00000517288 84 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC011979.2-201ENST00000527568 352 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC027176.1-201ENST00000560204 514 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 MIR4529-201ENST00000578110 78 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC040904.1-201ENST00000590850 223 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL590229.1-201ENST00000603497 542 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC064872.1-201ENST00000604823 1072 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL158032.1-201ENST00000605401 106 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 MIR15A-201ENST00000607334 83 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AL158063.1-201ENST00000615349 536 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 CTSLP2-204ENST00000629029 392 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
VPS39Q96JC1 AC005336.3-201ENST00000623833 2679 ntBASIC2.29□□□□□ -2.04
VPS39Q96JC1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
VPS39Q96JC1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
VPS39Q96JC1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 HSPE1P11-201ENST00000339579 310 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 RNU6-282P-201ENST00000365357 103 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 SNORA75B-201ENST00000384053 137 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 RNU6-348P-201ENST00000384386 107 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 SNORA24.1-201ENST00000384401 135 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms