Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP53Q70EK8 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.93□□□□□ -1.78
USP53Q70EK8 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
USP53Q70EK8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USP53Q70EK8 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
USP53Q70EK8 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USP53Q70EK8 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
USP53Q70EK8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.92□□□□□ -1.78
USP53Q70EK8 SNORA60-201ENST00000362396 134 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU6-227P-201ENST00000362865 103 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU6-884P-201ENST00000363889 107 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU6-105P-201ENST00000363909 104 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU6-450P-201ENST00000364654 107 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 Y_RNA.380-201ENST00000365663 111 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU6-1035P-201ENST00000384477 107 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 MIR625-201ENST00000385047 85 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.92□□□□□ -1.78
USP53Q70EK8 SNRPGP5-201ENST00000456003 220 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AC006026.2-201ENST00000457376 180 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AC006517.1-201ENST00000480485 328 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 RNU1-61P-201ENST00000516107 151 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 SNORA43.2-201ENST00000516652 128 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.92□□□□□ -1.78
USP53Q70EK8 AC016727.2-201ENST00000603988 621 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 Z98751.3-201ENST00000604447 521 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 uc_338.32-201ENST00000615087 172 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AL713922.2-201ENST00000619384 716 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AC012314.7-201ENST00000619693 93 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 AL354798.1-201ENST00000622505 329 ntBASIC3.92□□□□□ -1.78
USP53Q70EK8 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
USP53Q70EK8 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.92□□□□□ -1.78
USP53Q70EK8 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.92□□□□□ -1.78
USP53Q70EK8 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP53Q70EK8 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP53Q70EK8 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.91□□□□□ -1.78
USP53Q70EK8 RNU6-942P-201ENST00000363002 107 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 Y_RNA.176-201ENST00000363815 109 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 RNU6-898P-201ENST00000365627 104 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 Y_RNA.424-201ENST00000384063 103 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 RNU6-784P-201ENST00000384330 106 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
USP53Q70EK8 RNU2-37P-201ENST00000410695 177 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 DPH3P2-201ENST00000422618 250 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.91□□□□□ -1.78
USP53Q70EK8 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.91□□□□□ -1.78
USP53Q70EK8 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.91□□□□□ -1.78
USP53Q70EK8 AC084357.1-201ENST00000473404 255 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 RPL30P10-201ENST00000488148 337 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 RPL29P14-201ENST00000495837 428 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 AC110794.1-201ENST00000505816 425 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.91□□□□□ -1.78
USP53Q70EK8 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.91□□□□□ -1.78
USP53Q70EK8 SCARNA13-201ENST00000516672 275 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 SNORA31.18-201ENST00000517043 134 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 AC010186.2-204ENST00000537668 439 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.91□□□□□ -1.78
USP53Q70EK8 MIR5188-201ENST00000583467 113 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 MIR5684-201ENST00000585074 65 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 AL355297.3-201ENST00000604082 446 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 MIR6134-201ENST00000617606 109 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
USP53Q70EK8 CUL1P1-201ENST00000509510 2425 ntBASIC3.91□□□□□ -1.78
USP53Q70EK8 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USP53Q70EK8 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.9□□□□□ -1.78
USP53Q70EK8 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
USP53Q70EK8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USP53Q70EK8 MTND5P27-201ENST00000428871 1720 ntBASIC3.9□□□□□ -1.78
USP53Q70EK8 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.9□□□□□ -1.79
USP53Q70EK8 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.9□□□□□ -1.79
USP53Q70EK8 Y_RNA.106-201ENST00000363189 100 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 Y_RNA.574-201ENST00000384766 95 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 MIR1302-3-201ENST00000408128 138 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 SNORA57.3-201ENST00000411095 141 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 NDUFS5P4-201ENST00000412983 318 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.9□□□□□ -1.79
USP53Q70EK8 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP53Q70EK8 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.9□□□□□ -1.79
USP53Q70EK8 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
USP53Q70EK8 AC010655.3-201ENST00000478818 450 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 AC093852.1-201ENST00000503587 266 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 AC011602.1-201ENST00000546484 331 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.9□□□□□ -1.79
USP53Q70EK8 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.9□□□□□ -1.79
USP53Q70EK8 MIR1244-1-201ENST00000612829 85 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 AL391261.4-201ENST00000616012 481 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
USP53Q70EK8 AC048347.1-201ENST00000624621 427 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 MIR1244-3-201ENST00000635744 85 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 MIR1244-2-201ENST00000636449 85 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 MIR1244-4-202ENST00000636813 85 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP53Q70EK8 AC066616.2-201ENST00000559334 1481 ntBASIC3.9□□□□□ -1.79
USP53Q70EK8 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP53Q70EK8 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms