Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-1303P-201ENST00000364841 107 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 RNU6-472P-201ENST00000384299 107 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 SNORA70E-201ENST00000384492 135 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 RNU1-89P-201ENST00000384592 164 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 SNORD73A-201ENST00000386062 65 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 SSXP9-201ENST00000417503 292 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 RPS15AP6-201ENST00000420703 385 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A3Q01955 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A3Q01955 OR2AQ1P-201ENST00000451972 200 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.53□□□□□ -1.84
COL4A3Q01955 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A3Q01955 RNU6-840P-201ENST00000517275 65 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 IGHV3-76-201ENST00000522465 295 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 MIR5188-201ENST00000583467 113 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 AC034102.8-201ENST00000615146 484 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A3Q01955 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
COL4A3Q01955 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A3Q01955 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.53□□□□□ -1.84
COL4A3Q01955 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A3Q01955 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A3Q01955 RNY1P16-201ENST00000363063 111 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 Y_RNA.324-201ENST00000365165 102 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 Y_RNA.350-201ENST00000365409 98 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 ELOCP20-201ENST00000422460 345 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 UBE2D3P2-201ENST00000424409 445 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AL590399.6-201ENST00000446396 307 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 ACA59.1-201ENST00000515966 143 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 SNORA31.22-201ENST00000517204 135 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AC026470.2-201ENST00000561492 181 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
COL4A3Q01955 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.52□□□□□ -1.85
COL4A3Q01955 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 MTND5P27-201ENST00000428871 1720 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.52□□□□□ -1.85
COL4A3Q01955 SCN1A-220ENST00000641603 12506 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 RNU1-70P-201ENST00000362618 164 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 RNU6-76P-201ENST00000384060 104 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 RNU6-607P-201ENST00000411283 108 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.52□□□□□ -1.85
COL4A3Q01955 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 CHEK2P4-201ENST00000450340 246 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.52□□□□□ -1.85
COL4A3Q01955 RNU6-914P-201ENST00000516749 109 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 AC144568.1-201ENST00000520139 137 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.52□□□□□ -1.85
COL4A3Q01955 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AL159153.1-201ENST00000619688 317 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 BMS1P21-201ENST00000634565 365 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 MIR4272-201ENST00000635924 64 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 AC073073.2-201ENST00000609827 2578 ntBASIC3.52□□□□□ -1.85
COL4A3Q01955 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.52□□□□□ -1.85
COL4A3Q01955 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL4A3Q01955 AC008669.1-201ENST00000565823 2178 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A3Q01955 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL4A3Q01955 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.51□□□□□ -1.85
COL4A3Q01955 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
COL4A3Q01955 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A3Q01955 NCAPGP1-201ENST00000505112 1814 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 RNU6-770P-201ENST00000363929 105 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 Y_RNA.214-201ENST00000364201 112 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 MT-TW-201ENST00000387382 68 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AL138885.1-201ENST00000405921 675 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 RPS24P6-201ENST00000452670 400 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 snoU13.3-201ENST00000459441 104 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 RNU7-169P-201ENST00000459456 61 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 SNORA25.11-201ENST00000515935 105 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 RNU6-143P-201ENST00000516942 93 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AL121603.1-201ENST00000553815 142 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.51□□□□□ -1.85
COL4A3Q01955 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL4A3Q01955 MIR3128-201ENST00000581957 66 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.51□□□□□ -1.85
COL4A3Q01955 AC004805.2-201ENST00000605382 482 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AC103858.2-201ENST00000621471 543 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
COL4A3Q01955 AC107027.3-201ENST00000565095 3473 ntBASIC3.51□□□□□ -1.85
COL4A3Q01955 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.5□□□□□ -1.85
COL4A3Q01955 UBE2L2-201ENST00000254302 429 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 SNORA80A-201ENST00000363922 136 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MIR578-201ENST00000384828 96 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MIR625-201ENST00000385047 85 ntBASIC3.5□□□□□ -1.85
COL4A3Q01955 MIR548I3-201ENST00000408378 149 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms