Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RNA5SP98-201ENST00000363158 137 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RNU6-251P-201ENST00000363235 104 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 SNORD115-41-201ENST00000363608 82 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 UBE2V1P8-201ENST00000437166 265 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RPEP5-201ENST00000441137 268 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 PGBD4P5-201ENST00000445958 426 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RNU6-775P-201ENST00000459318 96 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 SNORA3.4-201ENST00000515969 96 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.16□□□□□ -2.38
HSPG2P98160 OR8K4P-201ENST00000534608 872 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC018659.1-201ENST00000551083 169 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AC105036.1-201ENST00000566222 271 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC012414.6-201ENST00000568241 401 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.16□□□□□ -2.38
HSPG2P98160 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.16□□□□□ -2.38
HSPG2P98160 AL138726.1-201ENST00000614873 333 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC005832.2-201ENST00000538921 1430 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 Y_RNA.100-201ENST00000363141 102 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 U3.13-201ENST00000364804 214 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AL714022.1-201ENST00000439897 151 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AL590365.1-201ENST00000450788 243 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.16□□□□□ -2.38
HSPG2P98160 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.16□□□□□ -2.38
HSPG2P98160 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.16□□□□□ -2.38
HSPG2P98160 AC116337.2-201ENST00000477662 156 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AL163195.1-201ENST00000496941 348 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.16□□□□□ -2.38
HSPG2P98160 ZNF92P3-201ENST00000596594 954 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC010900.2-201ENST00000604508 210 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC080013.4-201ENST00000607624 649 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 U4atac.1-201ENST00000618345 95 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 SNORD3E-201ENST00000362899 217 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 SNORD114-31-201ENST00000363219 75 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RNU6-270P-201ENST00000364131 105 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
HSPG2P98160 ZNF863P-201ENST00000426746 417 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 RPL36AP53-201ENST00000432891 316 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RPS15AP5-201ENST00000436276 388 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AP001025.1-201ENST00000486139 332 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RNU5A-7P-201ENST00000515979 116 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 Y_RNA.700-201ENST00000516806 100 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 RNA5SP165-201ENST00000517142 115 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.16□□□□□ -2.38
HSPG2P98160 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.16□□□□□ -2.38
HSPG2P98160 MTCYBP22-201ENST00000603788 447 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AC068276.1-201ENST00000605793 379 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 DUXAP10-204ENST00000612052 616 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 U6.48-201ENST00000618523 106 ntBASIC0.16□□□□□ -2.38
HSPG2P98160 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.38
HSPG2P98160 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC0.15□□□□□ -2.38
HSPG2P98160 DYNLT3P2-201ENST00000442517 295 ntBASIC0.15□□□□□ -2.38
HSPG2P98160 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.15□□□□□ -2.38
HSPG2P98160 BUD31P2-201ENST00000449374 300 ntBASIC0.15□□□□□ -2.38
HSPG2P98160 AL096803.2-201ENST00000450032 677 ntBASIC0.15□□□□□ -2.38
HSPG2P98160 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.15□□□□□ -2.38
HSPG2P98160 AC068057.2-201ENST00000624047 895 ntBASIC0.15□□□□□ -2.38
HSPG2P98160 AC092192.1-201ENST00000633154 1018 ntBASIC0.15□□□□□ -2.38
HSPG2P98160 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.15□□□□□ -2.38
HSPG2P98160 RNU6-1243P-201ENST00000364028 107 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
HSPG2P98160 RNU6-339P-201ENST00000384310 107 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 Y_RNA.514-201ENST00000384528 112 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 RNU6-244P-201ENST00000391028 104 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.15□□□□□ -2.39
HSPG2P98160 AC027119.1-201ENST00000440877 241 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 Z82190.1-201ENST00000454534 490 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.15□□□□□ -2.39
HSPG2P98160 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.15□□□□□ -2.39
HSPG2P98160 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC0.15□□□□□ -2.39
HSPG2P98160 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.15□□□□□ -2.39
HSPG2P98160 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.15□□□□□ -2.39
HSPG2P98160 RNU5E-1-201ENST00000362477 120 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 RPS3AP36-201ENST00000398190 775 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 PRRC2CP1-201ENST00000404428 159 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 GTF2IP20-201ENST00000431663 360 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.15□□□□□ -2.39
HSPG2P98160 GTF2IP13-201ENST00000438487 386 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 SNORA31.6-201ENST00000516241 130 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 RNU6-1282P-201ENST00000516735 96 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.15□□□□□ -2.39
HSPG2P98160 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.15□□□□□ -2.39
HSPG2P98160 AP003122.4-201ENST00000530980 758 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 AC015688.2-201ENST00000584523 262 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 AC021171.1-201ENST00000603137 706 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 XIAPP1-201ENST00000603162 600 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
HSPG2P98160 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
HSPG2P98160 RNU6-833P-201ENST00000363486 107 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 HMGN2P39-201ENST00000398005 273 ntBASIC0.15□□□□□ -2.39
HSPG2P98160 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms