Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-506P-201ENST00000516553 94 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RNU6-143P-201ENST00000516942 93 ntBASIC3.19□□□□□ -1.9
CTCFP49711 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.19□□□□□ -1.9
CTCFP49711 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AC009902.1-201ENST00000519351 183 ntBASIC3.19□□□□□ -1.9
CTCFP49711 SUB1P1-201ENST00000524415 382 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AP001893.2-201ENST00000526949 202 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC016957.1-201ENST00000534895 309 ntBASIC3.19□□□□□ -1.9
CTCFP49711 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CTCFP49711 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AC020895.1-201ENST00000595362 272 ntBASIC3.19□□□□□ -1.9
CTCFP49711 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.19□□□□□ -1.9
CTCFP49711 AC012119.1-201ENST00000603184 222 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AP001330.5-201ENST00000607176 411 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC008536.2-201ENST00000607284 349 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC092954.2-201ENST00000609103 430 ntBASIC3.19□□□□□ -1.9
CTCFP49711 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC110079.1-202ENST00000635213 138 ntBASIC3.19□□□□□ -1.9
CTCFP49711 MIR6733-201ENST00000635723 61 ntBASIC3.19□□□□□ -1.9
CTCFP49711 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.19□□□□□ -1.9
CTCFP49711 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.18□□□□□ -1.9
CTCFP49711 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.18□□□□□ -1.9
CTCFP49711 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CTCFP49711 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CTCFP49711 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CTCFP49711 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CTCFP49711 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CTCFP49711 MIR301A-201ENST00000385261 86 ntBASIC3.18□□□□□ -1.9
CTCFP49711 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.18□□□□□ -1.9
CTCFP49711 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.18□□□□□ -1.9
CTCFP49711 MTND1P34-201ENST00000438556 671 ntBASIC3.18□□□□□ -1.9
CTCFP49711 DPPA3P1-201ENST00000448050 469 ntBASIC3.18□□□□□ -1.9
CTCFP49711 PSPHP1-201ENST00000450062 261 ntBASIC3.18□□□□□ -1.9
CTCFP49711 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.18□□□□□ -1.9
CTCFP49711 AC006512.1-201ENST00000468816 291 ntBASIC3.18□□□□□ -1.9
CTCFP49711 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.18□□□□□ -1.9
CTCFP49711 RPS29P20-201ENST00000489592 171 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
CTCFP49711 AC008752.3-201ENST00000588113 712 ntBASIC3.18□□□□□ -1.9
CTCFP49711 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.18□□□□□ -1.9
CTCFP49711 AC012507.3-201ENST00000603556 477 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC007621.1-201ENST00000604544 437 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC019159.1-201ENST00000605094 187 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC126118.1-201ENST00000607744 628 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC002064.3-201ENST00000623448 346 ntBASIC3.18□□□□□ -1.9
CTCFP49711 AC139792.3-201ENST00000623525 224 ntBASIC3.18□□□□□ -1.9
CTCFP49711 U6.114-201ENST00000636407 96 ntBASIC3.18□□□□□ -1.9
CTCFP49711 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.18□□□□□ -1.9
CTCFP49711 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CTCFP49711 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CTCFP49711 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.17□□□□□ -1.9
CTCFP49711 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.17□□□□□ -1.9
CTCFP49711 SNORD114-30-201ENST00000364448 72 ntBASIC3.17□□□□□ -1.9
CTCFP49711 Y_RNA.381-201ENST00000365666 102 ntBASIC3.17□□□□□ -1.9
CTCFP49711 SNORA75B-201ENST00000384053 137 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RNU6-1215P-201ENST00000384441 102 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RNU6-550P-201ENST00000391057 101 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RNU6-1158P-201ENST00000391167 107 ntBASIC3.17□□□□□ -1.9
CTCFP49711 MTCO1P21-201ENST00000416634 589 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.17□□□□□ -1.9
CTCFP49711 NDUFA5P4-201ENST00000436704 385 ntBASIC3.17□□□□□ -1.9
CTCFP49711 HIGD1AP2-201ENST00000446367 280 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AL118520.1-201ENST00000450770 291 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.17□□□□□ -1.9
CTCFP49711 RPL23AP42-201ENST00000471152 471 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RPS15AP34-201ENST00000487776 387 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC019235.1-201ENST00000503847 207 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RNU6-703P-201ENST00000516946 107 ntBASIC3.17□□□□□ -1.9
CTCFP49711 RNA5SP503-201ENST00000517047 117 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AP005435.4-201ENST00000529514 284 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.17□□□□□ -1.9
CTCFP49711 AL157871.3-201ENST00000557231 293 ntBASIC3.17□□□□□ -1.9
CTCFP49711 HMGN2P15-201ENST00000585707 270 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC068790.6-201ENST00000602558 258 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC146944.4-201ENST00000602697 718 ntBASIC3.17□□□□□ -1.9
CTCFP49711 MTND4LP5-201ENST00000605152 292 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AL021997.1-201ENST00000605757 193 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AF250324.2-201ENST00000608299 610 ntBASIC3.17□□□□□ -1.9
CTCFP49711 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
CTCFP49711 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.17□□□□□ -1.9
CTCFP49711 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CTCFP49711 CKAP2P1-201ENST00000555477 2049 ntBASIC3.17□□□□□ -1.9
CTCFP49711 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.17□□□□□ -1.9
CTCFP49711 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CTCFP49711 AL139276.1-201ENST00000311910 1001 ntBASIC3.16□□□□□ -1.9
CTCFP49711 RNU1-73P-201ENST00000383971 164 ntBASIC3.16□□□□□ -1.9
CTCFP49711 MIR7-2-201ENST00000384970 110 ntBASIC3.16□□□□□ -1.9
CTCFP49711 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CTCFP49711 RPL19P1-201ENST00000411635 428 ntBASIC3.16□□□□□ -1.9
CTCFP49711 EEF1A1P40-201ENST00000412883 573 ntBASIC3.16□□□□□ -1.9
CTCFP49711 OR6C66P-201ENST00000414917 930 ntBASIC3.16□□□□□ -1.9
CTCFP49711 MTCO3P30-201ENST00000426425 670 ntBASIC3.16□□□□□ -1.9
CTCFP49711 CALM2P2-201ENST00000428512 440 ntBASIC3.16□□□□□ -1.9
CTCFP49711 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CTCFP49711 MTND3P21-201ENST00000433774 331 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms