Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.33-201ENST00000362591 102 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 RNU6-270P-201ENST00000364131 105 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHMT1P34896 AL445529.1-201ENST00000398713 389 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 MIR888-201ENST00000401186 77 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 RNU6-1068P-201ENST00000410958 103 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 AC093151.1-201ENST00000427711 313 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 MYL8P-204ENST00000431574 518 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 RNU7-180P-201ENST00000459240 63 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC128713.1-201ENST00000471495 306 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 SRIP1-201ENST00000489235 288 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.07□□□□□ -1.92
SHMT1P34896 RPL38P4-201ENST00000502376 214 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 FAM92A1P2-202ENST00000504766 877 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.07□□□□□ -1.92
SHMT1P34896 AC091885.1-201ENST00000506658 268 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.07□□□□□ -1.92
SHMT1P34896 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
SHMT1P34896 AL138976.2-201ENST00000563989 694 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 MIR548AC-201ENST00000585049 88 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC073308.1-201ENST00000623696 305 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.07□□□□□ -1.92
SHMT1P34896 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.07□□□□□ -1.92
SHMT1P34896 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.07□□□□□ -1.92
SHMT1P34896 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.07□□□□□ -1.92
SHMT1P34896 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
SHMT1P34896 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SHMT1P34896 HSPA8P4-201ENST00000511877 1920 ntBASIC3.07□□□□□ -1.92
SHMT1P34896 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.07□□□□□ -1.92
SHMT1P34896 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHMT1P34896 RNU6-451P-201ENST00000362921 107 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 RNU6-371P-201ENST00000364283 108 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 SNORA26.7-201ENST00000391288 122 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SHMT1P34896 AL512633.1-201ENST00000399931 655 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 MIR887-201ENST00000401258 79 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 AC099548.1-201ENST00000421443 426 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 SCARNA18-201ENST00000459004 134 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 RNA5SP320-201ENST00000516263 124 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.06□□□□□ -1.92
SHMT1P34896 SUB1P1-201ENST00000524415 382 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHMT1P34896 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.06□□□□□ -1.92
SHMT1P34896 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.06□□□□□ -1.92
SHMT1P34896 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.06□□□□□ -1.92
SHMT1P34896 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.06□□□□□ -1.92
SHMT1P34896 MIR4801-201ENST00000582704 82 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 MIR4424-201ENST00000585257 86 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 AL355598.1-201ENST00000604169 202 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 MTND4P35-201ENST00000604257 1375 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.06□□□□□ -1.92
SHMT1P34896 AC013412.1-201ENST00000610687 192 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 uc_338.34-201ENST00000617467 174 ntBASIC3.06□□□□□ -1.92
SHMT1P34896 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHMT1P34896 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
SHMT1P34896 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SHMT1P34896 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHMT1P34896 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.05□□□□□ -1.92
SHMT1P34896 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SHMT1P34896 RNU6-1025P-201ENST00000410629 104 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 EEF1A1P40-201ENST00000412883 573 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 MTND1P23-201ENST00000416931 372 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.05□□□□□ -1.92
SHMT1P34896 HMGN2P30-201ENST00000423237 256 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.05□□□□□ -1.92
SHMT1P34896 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.05□□□□□ -1.92
SHMT1P34896 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.05□□□□□ -1.92
SHMT1P34896 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHMT1P34896 MTND1P2-201ENST00000430604 821 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 RPL21P2-201ENST00000440049 481 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 AC011816.1-201ENST00000441346 546 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 BRK1P2-201ENST00000442875 223 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 AC010099.1-201ENST00000455434 375 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.05□□□□□ -1.92
SHMT1P34896 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.05□□□□□ -1.92
SHMT1P34896 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.05□□□□□ -1.92
SHMT1P34896 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHMT1P34896 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.05□□□□□ -1.92
SHMT1P34896 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.05□□□□□ -1.92
SHMT1P34896 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.05□□□□□ -1.92
SHMT1P34896 MIR3945-201ENST00000581853 98 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 U6.42-201ENST00000618440 107 ntBASIC3.05□□□□□ -1.92
SHMT1P34896 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHMT1P34896 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHMT1P34896 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.05□□□□□ -1.92
SHMT1P34896 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms