Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL691482.1-201ENST00000453255 87 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX1P28360 snoU13.6-201ENST00000458785 104 ntBASIC4.53□□□□□ -1.68
MSX1P28360 snoU13.24-201ENST00000458998 104 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-1211P-201ENST00000459179 105 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RN7SL459P-201ENST00000481078 302 ntBASIC4.53□□□□□ -1.68
MSX1P28360 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX1P28360 Y_RNA.686-201ENST00000516548 134 ntBASIC4.53□□□□□ -1.68
MSX1P28360 RNU6-1234P-201ENST00000516877 103 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AP002001.1-203ENST00000534002 267 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.53□□□□□ -1.68
MSX1P28360 AC009127.3-201ENST00000570531 403 ntBASIC4.53□□□□□ -1.68
MSX1P28360 DNAJC19P2-201ENST00000593340 302 ntBASIC4.53□□□□□ -1.68
MSX1P28360 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX1P28360 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AC019206.1-201ENST00000621938 425 ntBASIC4.53□□□□□ -1.68
MSX1P28360 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX1P28360 AC008873.1-201ENST00000625051 138 ntBASIC4.53□□□□□ -1.68
MSX1P28360 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.53□□□□□ -1.68
MSX1P28360 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSX1P28360 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSX1P28360 SRP72P2-201ENST00000344851 1979 ntBASIC4.53□□□□□ -1.68
MSX1P28360 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.69
MSX1P28360 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX1P28360 ADAM5-202ENST00000399789 1942 ntBASIC4.52□□□□□ -1.69
MSX1P28360 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX1P28360 ASNSP1-201ENST00000518311 1939 ntBASIC4.52□□□□□ -1.69
MSX1P28360 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSX1P28360 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX1P28360 MFSD8-216ENST00000641147 4009 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RNU1-32P-201ENST00000363937 159 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RNU6-335P-201ENST00000364563 113 ntBASIC4.52□□□□□ -1.69
MSX1P28360 UBBP2-201ENST00000376781 231 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RNU6-140P-201ENST00000384566 108 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RNU6-376P-201ENST00000384731 106 ntBASIC4.52□□□□□ -1.69
MSX1P28360 MIR544A-201ENST00000384855 91 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RN7SKP16-201ENST00000410180 299 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RPS26P42-201ENST00000413485 326 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC092047.1-201ENST00000424997 240 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC078809.1-201ENST00000427601 140 ntBASIC4.52□□□□□ -1.69
MSX1P28360 FTH1P6-201ENST00000430768 320 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RPS17P2-201ENST00000461663 408 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RPL30P12-201ENST00000474666 353 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC107027.2-201ENST00000512197 115 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RN7SKP122-201ENST00000515923 296 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RN7SKP164-201ENST00000516138 266 ntBASIC4.52□□□□□ -1.69
MSX1P28360 SNORA31.8-201ENST00000516327 108 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX1P28360 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.52□□□□□ -1.69
MSX1P28360 AC090281.1-201ENST00000523019 276 ntBASIC4.52□□□□□ -1.69
MSX1P28360 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
MSX1P28360 AC022616.8-201ENST00000533569 253 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX1P28360 CR383656.8-201ENST00000549046 145 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC112693.2-201ENST00000556538 232 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AC021231.3-201ENST00000558497 370 ntBASIC4.52□□□□□ -1.69
MSX1P28360 MIR4744-201ENST00000581563 82 ntBASIC4.52□□□□□ -1.69
MSX1P28360 CR381572.2-201ENST00000624852 397 ntBASIC4.52□□□□□ -1.69
MSX1P28360 AL034408.1-202ENST00000636088 415 ntBASIC4.52□□□□□ -1.69
MSX1P28360 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX1P28360 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
MSX1P28360 AC008568.2-201ENST00000623862 2313 ntBASIC4.52□□□□□ -1.69
MSX1P28360 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.52□□□□□ -1.69
MSX1P28360 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.52□□□□□ -1.69
MSX1P28360 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX1P28360 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX1P28360 AL592437.2-201ENST00000421655 2434 ntBASIC4.51□□□□□ -1.69
MSX1P28360 RNU6-103P-201ENST00000363686 107 ntBASIC4.51□□□□□ -1.69
MSX1P28360 SNORA20-201ENST00000384662 132 ntBASIC4.51□□□□□ -1.69
MSX1P28360 RNU6-578P-201ENST00000390980 103 ntBASIC4.51□□□□□ -1.69
MSX1P28360 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.51□□□□□ -1.69
MSX1P28360 ELOCP21-201ENST00000412558 336 ntBASIC4.51□□□□□ -1.69
MSX1P28360 AC009963.1-201ENST00000417265 157 ntBASIC4.51□□□□□ -1.69
MSX1P28360 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.51□□□□□ -1.69
MSX1P28360 AC112498.1-201ENST00000444401 332 ntBASIC4.51□□□□□ -1.69
MSX1P28360 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.51□□□□□ -1.69
MSX1P28360 AP000705.1-201ENST00000454567 350 ntBASIC4.51□□□□□ -1.69
MSX1P28360 RNU1-103P-201ENST00000516502 125 ntBASIC4.51□□□□□ -1.69
MSX1P28360 AC008745.1-201ENST00000604064 271 ntBASIC4.51□□□□□ -1.69
MSX1P28360 MIR6715B-201ENST00000637172 77 ntBASIC4.51□□□□□ -1.69
MSX1P28360 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSX1P28360 AC110774.1-201ENST00000623567 2018 ntBASIC4.51□□□□□ -1.69
MSX1P28360 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX1P28360 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.51□□□□□ -1.69
MSX1P28360 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSX1P28360 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.5□□□□□ -1.69
MSX1P28360 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 AC092268.1-201ENST00000342691 405 ntBASIC4.5□□□□□ -1.69
MSX1P28360 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.5□□□□□ -1.69
MSX1P28360 RNU6-763P-201ENST00000390865 106 ntBASIC4.5□□□□□ -1.69
MSX1P28360 AL512633.1-201ENST00000399931 655 ntBASIC4.5□□□□□ -1.69
MSX1P28360 RPS16P5-201ENST00000406501 404 ntBASIC4.5□□□□□ -1.69
MSX1P28360 AC073264.2-201ENST00000448886 166 ntBASIC4.5□□□□□ -1.69
MSX1P28360 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
MSX1P28360 IGKV1-32-201ENST00000519290 311 ntBASIC4.5□□□□□ -1.69
MSX1P28360 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 162.7 ms