Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.2□□□□□ -2.06
SDC1P18827 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC008716.1-201ENST00000511084 513 ntBASIC2.2□□□□□ -2.06
SDC1P18827 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 ACA59.2-201ENST00000517061 156 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 AP002963.1-201ENST00000530590 184 ntBASIC2.2□□□□□ -2.06
SDC1P18827 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AC106782.4-201ENST00000568264 210 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AL391840.1-201ENST00000571144 367 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC009163.5-201ENST00000575421 637 ntBASIC2.2□□□□□ -2.06
SDC1P18827 MIR4775-201ENST00000581168 75 ntBASIC2.2□□□□□ -2.06
SDC1P18827 MIR3117-201ENST00000584034 78 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.2□□□□□ -2.06
SDC1P18827 AC068790.2-201ENST00000602601 557 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC006023.1-201ENST00000603944 259 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC010378.1-201ENST00000619270 362 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC136475.10-201ENST00000620253 385 ntBASIC2.2□□□□□ -2.06
SDC1P18827 MIR6766-201ENST00000622641 72 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 AC080128.1-201ENST00000474389 1917 ntBASIC2.2□□□□□ -2.06
SDC1P18827 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.19□□□□□ -2.06
SDC1P18827 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.19□□□□□ -2.06
SDC1P18827 Y_RNA.51-201ENST00000362725 102 ntBASIC2.19□□□□□ -2.06
SDC1P18827 RNU6-371P-201ENST00000364283 108 ntBASIC2.19□□□□□ -2.06
SDC1P18827 SNORD14B-201ENST00000364533 90 ntBASIC2.19□□□□□ -2.06
SDC1P18827 RNU6-1280P-201ENST00000365211 107 ntBASIC2.19□□□□□ -2.06
SDC1P18827 RNU6-1179P-201ENST00000384667 107 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AL591416.1-201ENST00000404015 867 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC1P18827 AL365338.1-201ENST00000422282 858 ntBASIC2.19□□□□□ -2.06
SDC1P18827 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SDC1P18827 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC1P18827 AC018634.1-201ENST00000437554 401 ntBASIC2.19□□□□□ -2.06
SDC1P18827 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AP001324.2-201ENST00000461163 319 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AC093534.1-201ENST00000504977 132 ntBASIC2.19□□□□□ -2.06
SDC1P18827 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.19□□□□□ -2.06
SDC1P18827 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.19□□□□□ -2.06
SDC1P18827 AC109329.2-201ENST00000519658 482 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AP000889.2-201ENST00000532684 490 ntBASIC2.19□□□□□ -2.06
SDC1P18827 SUB1P2-201ENST00000556401 297 ntBASIC2.19□□□□□ -2.06
SDC1P18827 AC092325.1-201ENST00000566449 554 ntBASIC2.19□□□□□ -2.06
SDC1P18827 MYL12BP1-201ENST00000569826 507 ntBASIC2.19□□□□□ -2.06
SDC1P18827 MIR5007-201ENST00000583098 95 ntBASIC2.19□□□□□ -2.06
SDC1P18827 MIR3611-201ENST00000584484 83 ntBASIC2.19□□□□□ -2.06
SDC1P18827 NRBF2P5-201ENST00000603087 788 ntBASIC2.19□□□□□ -2.06
SDC1P18827 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC1P18827 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC1P18827 AC009161.2-201ENST00000624626 138 ntBASIC2.19□□□□□ -2.06
SDC1P18827 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.19□□□□□ -2.06
SDC1P18827 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.19□□□□□ -2.06
SDC1P18827 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SDC1P18827 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.18□□□□□ -2.06
SDC1P18827 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SDC1P18827 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
SDC1P18827 RNU6-116P-201ENST00000384042 109 ntBASIC2.18□□□□□ -2.06
SDC1P18827 MIR144-201ENST00000384886 86 ntBASIC2.18□□□□□ -2.06
SDC1P18827 MIR147B-201ENST00000390185 80 ntBASIC2.18□□□□□ -2.06
SDC1P18827 RNU6-550P-201ENST00000391057 101 ntBASIC2.18□□□□□ -2.06
SDC1P18827 CIR1P3-201ENST00000405137 479 ntBASIC2.18□□□□□ -2.06
SDC1P18827 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SDC1P18827 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.18□□□□□ -2.06
SDC1P18827 OR6C66P-201ENST00000414917 930 ntBASIC2.18□□□□□ -2.06
SDC1P18827 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 AL445687.1-201ENST00000439946 251 ntBASIC2.18□□□□□ -2.06
SDC1P18827 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.18□□□□□ -2.06
SDC1P18827 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 NDUFB1P2-201ENST00000449477 176 ntBASIC2.18□□□□□ -2.06
SDC1P18827 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC1P18827 RPS29P15-201ENST00000458329 171 ntBASIC2.18□□□□□ -2.06
SDC1P18827 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
SDC1P18827 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC1P18827 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC1P18827 AC135279.1-201ENST00000543493 504 ntBASIC2.18□□□□□ -2.06
SDC1P18827 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC1P18827 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.18□□□□□ -2.06
SDC1P18827 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 AC073648.5-201ENST00000603502 305 ntBASIC2.18□□□□□ -2.06
SDC1P18827 AL160281.1-201ENST00000605307 311 ntBASIC2.18□□□□□ -2.06
SDC1P18827 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.18□□□□□ -2.06
SDC1P18827 U6.114-201ENST00000636407 96 ntBASIC2.18□□□□□ -2.06
SDC1P18827 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.18□□□□□ -2.06
SDC1P18827 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
SDC1P18827 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.18□□□□□ -2.06
SDC1P18827 AC010329.5-201ENST00000623497 2174 ntBASIC2.17□□□□□ -2.06
SDC1P18827 AC005336.3-201ENST00000623833 2679 ntBASIC2.17□□□□□ -2.06
SDC1P18827 ZNF720P1-201ENST00000562403 1939 ntBASIC2.17□□□□□ -2.06
SDC1P18827 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SDC1P18827 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SDC1P18827 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.17□□□□□ -2.06
SDC1P18827 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SDC1P18827 Y_RNA.159-201ENST00000363674 87 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms