Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
APOEP02649 RPL30P13-201ENST00000418873 348 ntBASIC1.35□□□□□ -2.19
APOEP02649 MTCO2P20-201ENST00000437339 673 ntBASIC1.35□□□□□ -2.19
APOEP02649 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.35□□□□□ -2.19
APOEP02649 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.35□□□□□ -2.19
APOEP02649 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.35□□□□□ -2.19
APOEP02649 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.35□□□□□ -2.19
APOEP02649 RPF2P2-201ENST00000504693 896 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC024589.1-201ENST00000512207 263 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC009902.1-201ENST00000519351 183 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.35□□□□□ -2.19
APOEP02649 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.35□□□□□ -2.19
APOEP02649 AP000763.2-201ENST00000540641 163 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.35□□□□□ -2.19
APOEP02649 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.35□□□□□ -2.19
APOEP02649 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.35□□□□□ -2.19
APOEP02649 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.35□□□□□ -2.19
APOEP02649 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.35□□□□□ -2.19
APOEP02649 RPL21P136-201ENST00000605378 396 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC021755.4-201ENST00000616620 456 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC006338.1-201ENST00000618453 749 ntBASIC1.35□□□□□ -2.19
APOEP02649 AC006927.2-201ENST00000639256 389 ntBASIC1.35□□□□□ -2.19
APOEP02649 RNU6-777P-201ENST00000364265 104 ntBASIC1.34□□□□□ -2.19
APOEP02649 RNU6-853P-201ENST00000364306 107 ntBASIC1.34□□□□□ -2.19
APOEP02649 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.34□□□□□ -2.19
APOEP02649 MIR518D-201ENST00000385014 87 ntBASIC1.34□□□□□ -2.19
APOEP02649 MIR30A-201ENST00000385092 71 ntBASIC1.34□□□□□ -2.19
APOEP02649 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.34□□□□□ -2.19
APOEP02649 SNORA40.6-201ENST00000391153 128 ntBASIC1.34□□□□□ -2.19
APOEP02649 BTF3L4P2-201ENST00000392798 346 ntBASIC1.34□□□□□ -2.19
APOEP02649 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.34□□□□□ -2.19
APOEP02649 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.34□□□□□ -2.19
APOEP02649 AC092473.1-201ENST00000441098 221 ntBASIC1.34□□□□□ -2.19
APOEP02649 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC1.34□□□□□ -2.19
APOEP02649 SNRPFP4-201ENST00000456366 242 ntBASIC1.34□□□□□ -2.19
APOEP02649 PRELID3BP1-201ENST00000457142 540 ntBASIC1.34□□□□□ -2.19
APOEP02649 MEMO1P3-201ENST00000459811 302 ntBASIC1.34□□□□□ -2.19
APOEP02649 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC1.34□□□□□ -2.19
APOEP02649 AC004223.1-201ENST00000479840 271 ntBASIC1.34□□□□□ -2.19
APOEP02649 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.34□□□□□ -2.19
APOEP02649 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.34□□□□□ -2.19
APOEP02649 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.34□□□□□ -2.19
APOEP02649 MTCYBP43-201ENST00000513621 740 ntBASIC1.34□□□□□ -2.19
APOEP02649 RNU6-572P-201ENST00000516724 80 ntBASIC1.34□□□□□ -2.19
APOEP02649 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.34□□□□□ -2.19
APOEP02649 AP003033.1-201ENST00000527244 415 ntBASIC1.34□□□□□ -2.19
APOEP02649 AL132657.2-201ENST00000564417 358 ntBASIC1.34□□□□□ -2.19
APOEP02649 AL512347.1-201ENST00000566420 503 ntBASIC1.34□□□□□ -2.19
APOEP02649 AC023825.1-201ENST00000566704 1030 ntBASIC1.34□□□□□ -2.19
APOEP02649 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.34□□□□□ -2.19
APOEP02649 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.34□□□□□ -2.19
APOEP02649 RNU6-91P-201ENST00000607774 107 ntBASIC1.34□□□□□ -2.19
APOEP02649 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.34□□□□□ -2.19
APOEP02649 uc_338.12-201ENST00000616344 181 ntBASIC1.34□□□□□ -2.19
APOEP02649 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.34□□□□□ -2.19
APOEP02649 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
APOEP02649 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
APOEP02649 RNU6-1164P-201ENST00000364428 107 ntBASIC1.33□□□□□ -2.2
APOEP02649 RNU6-439P-201ENST00000384188 106 ntBASIC1.33□□□□□ -2.2
APOEP02649 TIMM9P2-201ENST00000419324 266 ntBASIC1.33□□□□□ -2.2
APOEP02649 Z82205.1-201ENST00000428456 297 ntBASIC1.33□□□□□ -2.2
APOEP02649 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.33□□□□□ -2.2
APOEP02649 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC1.33□□□□□ -2.2
APOEP02649 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.33□□□□□ -2.2
APOEP02649 AC005908.1-201ENST00000468701 347 ntBASIC1.33□□□□□ -2.2
APOEP02649 RPL31P58-201ENST00000469001 379 ntBASIC1.33□□□□□ -2.2
APOEP02649 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.33□□□□□ -2.2
APOEP02649 OR8K2P-201ENST00000524645 927 ntBASIC1.33□□□□□ -2.2
APOEP02649 AP003392.2-201ENST00000527269 208 ntBASIC1.33□□□□□ -2.2
APOEP02649 AC135279.1-201ENST00000543493 504 ntBASIC1.33□□□□□ -2.2
APOEP02649 AC136619.2-201ENST00000563361 631 ntBASIC1.33□□□□□ -2.2
APOEP02649 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.33□□□□□ -2.2
APOEP02649 MIR3660-201ENST00000584845 100 ntBASIC1.33□□□□□ -2.2
APOEP02649 AC004908.3-201ENST00000610248 625 ntBASIC1.33□□□□□ -2.2
APOEP02649 U1.36-201ENST00000620684 176 ntBASIC1.33□□□□□ -2.2
APOEP02649 AP000676.3-201ENST00000623299 569 ntBASIC1.33□□□□□ -2.2
APOEP02649 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.33□□□□□ -2.2
APOEP02649 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.33□□□□□ -2.2
APOEP02649 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
APOEP02649 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.32□□□□□ -2.2
APOEP02649 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
APOEP02649 SNORD14D-201ENST00000384390 87 ntBASIC1.32□□□□□ -2.2
APOEP02649 RNU6-14P-201ENST00000384630 106 ntBASIC1.32□□□□□ -2.2
APOEP02649 MIR19A-201ENST00000384878 82 ntBASIC1.32□□□□□ -2.2
APOEP02649 MTCO1P56-201ENST00000401674 224 ntBASIC1.32□□□□□ -2.2
APOEP02649 FTH1P15-201ENST00000406984 280 ntBASIC1.32□□□□□ -2.2
APOEP02649 RNU2-32P-201ENST00000411193 191 ntBASIC1.32□□□□□ -2.2
APOEP02649 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.32□□□□□ -2.2
APOEP02649 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.32□□□□□ -2.2
APOEP02649 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.32□□□□□ -2.2
APOEP02649 AL121601.2-201ENST00000438019 707 ntBASIC1.32□□□□□ -2.2
APOEP02649 AC005094.1-201ENST00000440420 368 ntBASIC1.32□□□□□ -2.2
APOEP02649 PTENP1-201ENST00000447117 1215 ntBASIC1.32□□□□□ -2.2
APOEP02649 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.32□□□□□ -2.2
APOEP02649 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.32□□□□□ -2.2
APOEP02649 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.32□□□□□ -2.2
APOEP02649 BTF3P15-201ENST00000455606 336 ntBASIC1.32□□□□□ -2.2
APOEP02649 RPS29P29-201ENST00000456396 171 ntBASIC1.32□□□□□ -2.2
APOEP02649 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.32□□□□□ -2.2
APOEP02649 SNORA44.1-201ENST00000517031 108 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 162.7 ms