Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU6-234P-201ENST00000365229 104 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RNU6-898P-201ENST00000365627 104 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RNU6-946P-201ENST00000383878 107 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 MIR17-201ENST00000385012 84 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 SNORD115.1-201ENST00000391109 76 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CPSF4O95639 MTCYBP36-201ENST00000404146 440 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 CIR1P3-201ENST00000405137 479 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RPS20P15-201ENST00000412792 311 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AC006366.1-201ENST00000422002 759 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL358453.1-201ENST00000422522 250 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 BX276092.3-201ENST00000424182 230 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.45□□□□□ -2.18
CPSF4O95639 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.45□□□□□ -2.18
CPSF4O95639 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.45□□□□□ -2.18
CPSF4O95639 HMGN2P3-201ENST00000433603 273 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 IFNA20P-201ENST00000436840 528 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 HMGN2P5-201ENST00000436882 273 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.45□□□□□ -2.18
CPSF4O95639 PSPHP1-201ENST00000450062 261 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL590365.1-201ENST00000450788 243 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 MTND1P12-201ENST00000455231 147 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.45□□□□□ -2.18
CPSF4O95639 AC093899.1-201ENST00000457984 376 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.45□□□□□ -2.18
CPSF4O95639 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.45□□□□□ -2.18
CPSF4O95639 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 FAM92A1P2-202ENST00000504766 877 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AC116655.1-201ENST00000508324 901 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.45□□□□□ -2.18
CPSF4O95639 AC116337.1-201ENST00000509680 687 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RNU2-10P-201ENST00000516375 211 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 Y_RNA.675-201ENST00000516389 149 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RNU6-677P-201ENST00000516914 101 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 RNA5SP337-201ENST00000517007 109 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 SNORA31.19-201ENST00000517079 126 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 SNORA31.23-201ENST00000517219 133 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.45□□□□□ -2.18
CPSF4O95639 AP005435.4-201ENST00000529514 284 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.45□□□□□ -2.18
CPSF4O95639 LINC00933-203ENST00000559812 219 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.45□□□□□ -2.18
CPSF4O95639 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CPSF4O95639 BX248123.2-201ENST00000606318 124 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AC069294.1-201ENST00000608397 350 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL355816.2-201ENST00000610049 647 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 AL161423.1-201ENST00000613700 262 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
CPSF4O95639 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.45□□□□□ -2.18
CPSF4O95639 AL359854.1-201ENST00000614203 1594 ntBASIC1.45□□□□□ -2.18
CPSF4O95639 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CPSF4O95639 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.45□□□□□ -2.18
CPSF4O95639 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
CPSF4O95639 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 RNU6-1280P-201ENST00000365211 107 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 MIR301A-201ENST00000385261 86 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 XKRYP1-201ENST00000423438 492 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AL591704.1-201ENST00000432574 275 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 XKRYP2-201ENST00000432915 492 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 MTND5P2-201ENST00000442927 1142 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 RPL7P12-201ENST00000446719 750 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 ZNF114P1-201ENST00000453500 292 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF4O95639 AC080013.2-201ENST00000460866 323 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC011005.2-201ENST00000487324 359 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC109927.2-201ENST00000506416 303 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF4O95639 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.44□□□□□ -2.18
CPSF4O95639 SNORA25.11-201ENST00000515935 105 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 SNORA3.4-201ENST00000515969 96 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 Y_RNA.689-201ENST00000516589 107 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 RNU6-1315P-201ENST00000517187 99 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AP003181.2-201ENST00000528941 181 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF4O95639 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
CPSF4O95639 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
CPSF4O95639 AC012435.1-202ENST00000568772 240 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC002400.1-201ENST00000569310 726 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.44□□□□□ -2.18
CPSF4O95639 MIR5697-201ENST00000578045 78 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC105245.1-201ENST00000581934 244 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC022022.2-201ENST00000602989 360 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 AC034229.4-201ENST00000607861 441 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF4O95639 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
CPSF4O95639 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC1.44□□□□□ -2.18
CPSF4O95639 AC025048.6-202ENST00000627667 438 ntBASIC1.44□□□□□ -2.18
CPSF4O95639 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CPSF4O95639 TEX21P-201ENST00000447107 1476 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CPSF4O95639 RNU6-486P-201ENST00000363116 107 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 RNU4-1-201ENST00000363925 141 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 RNU6-190P-201ENST00000384154 102 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 RNU6-748P-201ENST00000384648 107 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 MIR518D-201ENST00000385014 87 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 SNORA40C-201ENST00000391285 128 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 MIR1323-201ENST00000408090 73 ntBASIC1.43□□□□□ -2.18
CPSF4O95639 U6atac.2-201ENST00000408644 118 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms