Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RPS4XP7-201ENST00000406274 780 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.27□□□□□ -1.89
NPHP1O15259 AC000111.3-201ENST00000433478 193 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.27□□□□□ -1.89
NPHP1O15259 AL162395.1-201ENST00000457882 422 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AP002963.1-201ENST00000530590 184 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 SUB1P2-201ENST00000556401 297 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.27□□□□□ -1.89
NPHP1O15259 MIR3605-201ENST00000583214 100 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AC023043.3-201ENST00000593113 385 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.27□□□□□ -1.89
NPHP1O15259 AC069234.5-201ENST00000611056 416 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 AC107871.2-201ENST00000612894 502 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 U4.3-201ENST00000621047 82 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 SEPT14P19-203ENST00000633205 211 ntBASIC3.27□□□□□ -1.89
NPHP1O15259 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
NPHP1O15259 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NPHP1O15259 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NPHP1O15259 MTND4P27-201ENST00000450813 1354 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 AL359854.1-201ENST00000614203 1594 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
NPHP1O15259 Y_RNA.359-201ENST00000365498 102 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RNU4-48P-201ENST00000365559 182 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 SNORA67.4-201ENST00000384688 142 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RNU6-550P-201ENST00000391057 101 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RNU4-53P-201ENST00000410828 140 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.26□□□□□ -1.89
NPHP1O15259 FABP5P14-201ENST00000437273 393 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 MTND2P22-201ENST00000444325 1033 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.26□□□□□ -1.89
NPHP1O15259 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.26□□□□□ -1.89
NPHP1O15259 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.26□□□□□ -1.89
NPHP1O15259 RN7SKP24-201ENST00000515888 284 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 SNORA9.3-201ENST00000516383 129 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RPPH1-2P-201ENST00000516688 293 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 OR5AQ1P-201ENST00000527596 927 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.26□□□□□ -1.89
NPHP1O15259 MIR4524B-201ENST00000581569 115 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 MIR3199-1-201ENST00000582434 88 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 MIR4765-201ENST00000585007 77 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 RPL23AP88-201ENST00000605759 454 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 AC011890.2-201ENST00000613393 294 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 AC136475.10-201ENST00000620253 385 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.26□□□□□ -1.89
NPHP1O15259 MIR7157-201ENST00000635801 60 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 AC135776.4-201ENST00000624300 1904 ntBASIC3.26□□□□□ -1.89
NPHP1O15259 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPHP1O15259 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
NPHP1O15259 RNA5SP289-201ENST00000362332 137 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RNU6-384P-201ENST00000364900 104 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RNU6-116P-201ENST00000384042 109 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 MIR10A-201ENST00000385043 110 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RNU6-220P-201ENST00000390919 107 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 DEFB108C-201ENST00000400154 252 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 FTH1P15-201ENST00000406984 280 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 U3.37-201ENST00000408528 213 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NPHP1O15259 RPL21P90-201ENST00000415692 466 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC009963.1-201ENST00000417265 157 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 Z98742.3-201ENST00000418637 326 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 Z98742.2-201ENST00000431564 187 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.25□□□□□ -1.89
NPHP1O15259 RPS29P6-201ENST00000438196 145 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC104389.3-201ENST00000445629 235 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 MTATP6P26-201ENST00000445926 662 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RPS29P15-201ENST00000458329 171 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 AIG1P1-201ENST00000503376 148 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RNA5SP320-201ENST00000516263 124 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 RNA5SP503-201ENST00000517047 117 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 SCARNA3-201ENST00000517097 143 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.25□□□□□ -1.89
NPHP1O15259 OR4R1P-201ENST00000529879 463 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.25□□□□□ -1.89
NPHP1O15259 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 AC073648.5-201ENST00000603502 305 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 AC138627.2-201ENST00000624202 601 ntBASIC3.25□□□□□ -1.89
NPHP1O15259 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPHP1O15259 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.25□□□□□ -1.89
NPHP1O15259 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NPHP1O15259 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.25□□□□□ -1.89
NPHP1O15259 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 OR56A5-201ENST00000340110 738 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RNU6-1287P-201ENST00000362914 107 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RNU6-1029P-201ENST00000384109 107 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RNU6-1060P-201ENST00000384664 107 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.24□□□□□ -1.89
NPHP1O15259 AL596276.1-201ENST00000434465 418 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 HIGD1AP2-201ENST00000446367 280 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AL353705.4-201ENST00000449661 238 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AL441985.1-201ENST00000457727 251 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 TPT1P7-201ENST00000458300 517 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RN7SL499P-201ENST00000481141 276 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AC023141.11-201ENST00000508864 202 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 AC117522.2-201ENST00000510049 657 ntBASIC3.24□□□□□ -1.89
NPHP1O15259 RN7SKP298-201ENST00000515950 94 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms