Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AP006587.4-201ENST00000526053 529 ntBASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 AC099785.1-201ENST00000605697 437 ntBASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 AP002802.2-201ENST00000605877 235 ntBASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 AC096772.1-201ENST00000609146 564 ntBASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.98□□□□□ -2.25
TRAV1-1A0A0B4J248 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 MIR378A-201ENST00000362177 66 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 MIR424-201ENST00000362227 98 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6-1010P-201ENST00000362757 107 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6-1284P-201ENST00000363701 100 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU4-51P-201ENST00000364206 140 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6-60P-201ENST00000364792 103 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6-898P-201ENST00000365627 104 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 SNORA40.2-201ENST00000390847 128 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU11-3P-201ENST00000391111 133 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AL590084.1-201ENST00000407885 387 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AL591704.2-201ENST00000421658 181 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 MTND5P25-201ENST00000430499 799 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 SNRPEP7-201ENST00000438350 220 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC017099.1-201ENST00000448261 1028 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 PRELID3BP1-201ENST00000457142 540 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU1-123P-201ENST00000458950 160 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 SNORD13-201ENST00000459299 104 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RPL39P36-201ENST00000490784 156 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC104629.1-201ENST00000494226 508 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNU6-1028P-201ENST00000517164 93 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AP003049.1-201ENST00000529418 457 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RPS3AP4-201ENST00000555161 764 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC023813.2-201ENST00000564321 469 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AP000942.3-201ENST00000603702 160 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AL358072.1-201ENST00000604156 575 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RPL21P136-201ENST00000605378 396 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC016727.1-205ENST00000605437 569 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 AC099842.1-201ENST00000619919 596 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 PCMTD1P7-201ENST00000634506 357 ntBASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.97□□□□□ -2.25
TRAV1-1A0A0B4J248 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MIR337-201ENST00000362281 93 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 SNORD114-19-201ENST00000363072 75 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 RNU6-289P-201ENST00000364093 107 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 Y_RNA.338-201ENST00000365320 114 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 SNORD26-201ENST00000384147 75 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 SNORA40C-201ENST00000391285 128 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 BTF3L4P2-201ENST00000392798 346 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 FGF7P8-201ENST00000402994 292 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 FTH1P15-201ENST00000406984 280 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 RPL30P13-201ENST00000418873 348 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 CYCSP49-201ENST00000420810 319 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MTCO1P27-201ENST00000448269 226 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC245102.2-201ENST00000448956 180 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC009474.2-201ENST00000451383 136 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MTCYBP43-201ENST00000513621 740 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MTCO3P27-201ENST00000514397 196 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 RNU6-64P-201ENST00000517119 105 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AP000763.2-201ENST00000540641 163 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AL512347.1-201ENST00000566420 503 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC090970.3-201ENST00000612566 866 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC104985.3-201ENST00000623479 597 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AP003476.1-201ENST00000623984 516 ntBASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
TRAV1-1A0A0B4J248 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
TRAV1-1A0A0B4J248 RNU1-58P-201ENST00000362413 163 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms