Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 MARK2P15-201ENST00000432204 2186 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 Z73965.1-201ENST00000623412 2297 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 RNU1-108P-201ENST00000362556 161 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.217-201ENST00000364214 105 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 RNU6-213P-201ENST00000384051 104 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 RNU6-140P-201ENST00000384566 108 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 OOSP1P1-201ENST00000423265 274 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 COX6B1P7-201ENST00000430845 235 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.641-201ENST00000459414 105 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 AL390726.5-202ENST00000564800 256 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 MIR4284-201ENST00000578924 81 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 AL365265.1-201ENST00000621045 234 ntBASIC4.69□□□□□ -1.66
USP3Q9Y6I4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP3Q9Y6I4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 SRP72P2-201ENST00000344851 1979 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MIR195-201ENST00000385194 87 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MIR3065-201ENST00000390137 79 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.595-201ENST00000410403 105 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 RN7SKP61-201ENST00000410642 295 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 SETP5-201ENST00000437270 562 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MRPS10P1-201ENST00000448483 130 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 RPL23AP14-201ENST00000468281 468 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC015795.1-201ENST00000513669 327 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 RNU6-1282P-201ENST00000516735 96 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 RPL21P9-201ENST00000556149 474 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MIR4277-201ENST00000578298 84 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 MIR4308-201ENST00000580634 81 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC019159.1-201ENST00000605094 187 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC022441.3-201ENST00000605737 136 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC068831.7-201ENST00000616954 363 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 SNORA43.4-201ENST00000629559 138 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC073073.2-201ENST00000609827 2578 ntBASIC4.68□□□□□ -1.66
USP3Q9Y6I4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.68□□□□□ -1.66
USP3Q9Y6I4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-961P-201ENST00000363893 105 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-1141P-201ENST00000364520 107 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 Z98749.2-208ENST00000381646 500 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-22P-201ENST00000384355 107 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-417P-201ENST00000384712 107 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-1248P-201ENST00000391096 64 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 HLFP1-201ENST00000402375 499 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC016397.1-201ENST00000412463 242 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC005840.1-201ENST00000498412 377 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RNU6-313P-201ENST00000516317 112 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 CR383656.8-201ENST00000549046 145 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 ATP5J2P6-201ENST00000565203 266 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC079587.1-201ENST00000603846 277 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC091979.2-201ENST00000607514 214 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 AC091905.2-201ENST00000623143 306 ntBASIC4.67□□□□□ -1.66
USP3Q9Y6I4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms