Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RNU6-123P-201ENST00000516163 102 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-445P-201ENST00000516949 107 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC025755.1-201ENST00000521306 278 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 MTCYBP20-201ENST00000524239 1129 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 MIR4658-201ENST00000584344 65 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC008521.1-201ENST00000587471 187 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC005261.5-201ENST00000596280 355 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AL158032.1-201ENST00000605401 106 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC005332.10-201ENST00000612725 619 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 AC091834.1-201ENST00000614543 472 ntBASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PCDHGA1Q9Y5H4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 ZNF658B-202ENST00000615961 3375 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 Y_RNA.33-201ENST00000362591 102 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU1-35P-201ENST00000362782 153 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-179P-201ENST00000363350 107 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 Y_RNA.367-201ENST00000365544 101 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 MIR592-201ENST00000384959 97 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 BX276092.3-201ENST00000424182 230 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC132479.1-201ENST00000449160 144 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 GSTA11P-201ENST00000452866 669 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 BTF3P15-201ENST00000455606 336 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU7-26P-201ENST00000458980 63 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AL157871.3-201ENST00000557231 293 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AL391840.1-201ENST00000571144 367 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 ZNF861P-201ENST00000588126 639 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC068790.2-201ENST00000602601 557 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC069294.1-201ENST00000608397 350 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC107871.2-201ENST00000612894 502 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC048344.4-201ENST00000619744 527 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AC092593.1-201ENST00000515413 1815 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 AL109809.4-201ENST00000603520 2185 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 CDC27P3-201ENST00000635418 1910 ntBASIC2.6□□□□□ -1.99
PCDHGA1Q9Y5H4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-1119P-201ENST00000384349 108 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-1025P-201ENST00000410629 104 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-387P-201ENST00000411331 105 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 MTCYBP5-201ENST00000423752 1135 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL160275.3-201ENST00000423876 471 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 MTCO3P30-201ENST00000426425 670 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL078601.1-201ENST00000444542 271 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 C1DP4-201ENST00000455429 424 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 snoU13.15-201ENST00000459407 104 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RPL37P25-201ENST00000507308 276 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RBBP4P6-201ENST00000508098 202 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RN7SKP298-201ENST00000515950 94 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 SNORD27.1-201ENST00000516319 72 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-572P-201ENST00000516724 80 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RPL7P20-201ENST00000520308 745 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 OR4R1P-201ENST00000529879 463 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 MTCO3P13-201ENST00000577757 781 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL022154.1-201ENST00000604698 785 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 BNIP3P10-201ENST00000605360 577 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL021997.1-201ENST00000605757 193 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AC080013.6-201ENST00000606185 215 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 RNU6-91P-201ENST00000607774 107 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AC090115.4-201ENST00000609970 188 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AP001486.3-201ENST00000615334 372 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 HMGB1P24-202ENST00000615653 685 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 AL157786.1-207ENST00000627771 695 ntBASIC2.59□□□□□ -1.99
PCDHGA1Q9Y5H4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.59□□□□□ -2
PCDHGA1Q9Y5H4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.59□□□□□ -2
PCDHGA1Q9Y5H4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 AC138393.1-203ENST00000327086 343 ntBASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 SNORA67.1-201ENST00000364749 141 ntBASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 Z98749.2-208ENST00000381646 500 ntBASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 MIR1-2-201ENST00000384961 85 ntBASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 SNORA40C-201ENST00000391285 128 ntBASIC2.58□□□□□ -2
PCDHGA1Q9Y5H4 SNORA3.2-201ENST00000408221 125 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms