Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 GMFBP1-201ENST00000467831 427 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC104136.1-201ENST00000512969 394 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 MIR892C-201ENST00000516410 77 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 HPRT1P3-201ENST00000539521 576 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 ATP1B3P1-201ENST00000605365 821 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 RPL23AP88-201ENST00000605759 454 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC010378.1-201ENST00000619270 362 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC138627.2-201ENST00000624202 601 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 SCARNA15.3-201ENST00000626315 122 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 SCARNA4.1-201ENST00000628597 123 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS28Q9UK41 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS28Q9UK41 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS28Q9UK41 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC138393.1-203ENST00000327086 343 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 RNU6-858P-201ENST00000362436 107 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 Y_RNA.159-201ENST00000363674 87 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 RNU6-384P-201ENST00000364900 104 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 RNU1-109P-201ENST00000383960 147 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AL356010.1-201ENST00000456364 102 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC011005.2-201ENST00000487324 359 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC108078.1-201ENST00000508073 725 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC091133.4-201ENST00000511142 308 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 RNU6-405P-201ENST00000516637 110 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC009163.5-201ENST00000575421 637 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC138761.3-201ENST00000579993 334 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC087683.1-201ENST00000591187 441 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AL021997.1-201ENST00000605757 193 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS28Q9UK41 RNU6-91P-201ENST00000607774 107 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC097065.2-201ENST00000608159 533 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 RMST_4.1-201ENST00000616886 107 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC005609.4-201ENST00000625071 447 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS28Q9UK41 AC135776.4-201ENST00000624300 1904 ntBASIC2.87□□□□□ -1.95
VPS28Q9UK41 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS28Q9UK41 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 RNU6-45P-201ENST00000384471 107 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 MIR218-1-201ENST00000384999 110 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RPL19P1-201ENST00000411635 428 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 BTF3L4P1-201ENST00000413813 468 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 BX276092.3-201ENST00000424182 230 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 MTCO3P30-201ENST00000426425 670 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC002486.1-201ENST00000435098 391 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 RPL23AP20-201ENST00000447965 421 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 snoU109.2-201ENST00000459316 135 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 MED28P2-201ENST00000475771 317 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RN7SL297P-201ENST00000483161 293 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC105313.1-201ENST00000509121 353 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC114781.4-201ENST00000513707 639 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC105417.1-201ENST00000514691 285 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RNU1-86P-201ENST00000516108 154 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RNU5B-3P-201ENST00000516601 115 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 RNU1-107P-201ENST00000516617 154 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC109329.2-201ENST00000519658 482 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC073539.2-201ENST00000597113 165 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 AL449363.1-201ENST00000617815 186 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS28Q9UK41 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS28Q9UK41 AC092593.1-201ENST00000515413 1815 ntBASIC2.86□□□□□ -1.95
VPS28Q9UK41 OR4G2P-201ENST00000328113 903 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RPL9P7-201ENST00000330965 580 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RNU6-715P-201ENST00000365204 103 ntBASIC2.85□□□□□ -1.95
VPS28Q9UK41 RNU6-220P-201ENST00000390919 107 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms