Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC092447.10-201ENST00000620607 1652 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 Y_RNA.110-201ENST00000363220 99 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 MTCO1P56-201ENST00000401674 224 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC078974.1-201ENST00000411597 223 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 MTND4P3-201ENST00000417829 541 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 USP9YP26-201ENST00000421008 661 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.68□□□□□ -2.14
USP42Q9H9J4 AL353706.1-201ENST00000436728 494 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 MTND6P13-201ENST00000443510 523 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 ELOCP30-201ENST00000447108 299 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 PAXBP1P1-201ENST00000449315 447 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC023790.1-201ENST00000482174 347 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC034244.1-201ENST00000507687 207 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AF131216.2-201ENST00000512316 564 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.68□□□□□ -2.14
USP42Q9H9J4 DEFB131D-201ENST00000526803 184 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AP003033.1-201ENST00000527244 415 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC023538.1-201ENST00000534576 736 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC233702.2-202ENST00000562547 291 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC068338.1-201ENST00000565567 176 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC021171.1-201ENST00000603137 706 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 MIR6734-201ENST00000621166 68 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AP003400.5-201ENST00000624827 617 ntBASIC1.68□□□□□ -2.14
USP42Q9H9J4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
USP42Q9H9J4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.68□□□□□ -2.14
USP42Q9H9J4 RNY1-201ENST00000364228 113 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USP42Q9H9J4 MIR561-201ENST00000385216 97 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC074117.2-201ENST00000417130 397 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC013262.1-201ENST00000426710 252 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC055855.1-201ENST00000489563 579 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 RNA5SP137-201ENST00000516833 135 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 RNA5SP480-201ENST00000516840 109 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC005832.3-201ENST00000537929 631 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
USP42Q9H9J4 RPL21P136-201ENST00000605378 396 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AP002802.2-201ENST00000605877 235 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC107308.1-201ENST00000615897 301 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 AC008555.8-201ENST00000623602 2168 ntBASIC1.67□□□□□ -2.14
USP42Q9H9J4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.67□□□□□ -2.14
USP42Q9H9J4 SNORD115-3-201ENST00000363100 82 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL139397.2-201ENST00000404529 772 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 NDUFS5P1-201ENST00000405668 289 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 RNA5SP450-201ENST00000411206 102 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 VN1R108P-201ENST00000431580 830 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 SNRPEP7-201ENST00000438350 220 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 COX6CP14-201ENST00000469580 174 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 MTCYBP35-201ENST00000503630 1137 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 RNU6-703P-201ENST00000516946 107 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 RNU6-1028P-201ENST00000517164 93 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC012435.1-202ENST00000568772 240 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USP42Q9H9J4 UBE2L4-201ENST00000587688 464 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC034229.4-201ENST00000607861 441 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC004908.2-201ENST00000609090 574 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL773524.1-201ENST00000614065 229 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC018926.1-201ENST00000616335 435 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC017037.3-201ENST00000625016 472 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AP003485.1-201ENST00000625093 753 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 SNORA63.3-201ENST00000362682 132 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 SNORA25B-201ENST00000365507 128 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 RNU6-748P-201ENST00000384648 107 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 MIR758-201ENST00000390227 88 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL449283.1-202ENST00000418249 604 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 RPS4XP11-201ENST00000446897 772 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 RPS3AP22-201ENST00000488297 769 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
USP42Q9H9J4 AP005639.2-201ENST00000527592 928 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 DUXAP5-201ENST00000529668 529 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.66□□□□□ -2.14
USP42Q9H9J4 PSMA3P-201ENST00000555485 635 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC008507.2-201ENST00000588402 1176 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL512427.1-201ENST00000618593 349 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AC008121.3-201ENST00000618726 433 ntBASIC1.66□□□□□ -2.14
USP42Q9H9J4 AL158163.2-201ENST00000619110 700 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms