Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC016691.1-201ENST00000441321 413 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 NEFMP1-201ENST00000443423 1006 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 NFU1P2-201ENST00000448700 469 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.73□□□□□ -1.97
USP28Q96RU2 RNU7-23P-201ENST00000459465 62 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 MTCO3P38-201ENST00000468910 766 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RPL23AP70-201ENST00000483361 460 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RPS15AP34-201ENST00000487776 387 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC109927.2-201ENST00000506416 303 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC117522.1-201ENST00000509821 380 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC108078.2-201ENST00000510750 236 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 SNORA31.3-201ENST00000516029 96 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 SNORA40.12-201ENST00000516329 111 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RNA5SP471-201ENST00000516971 106 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RNU6-835P-201ENST00000516974 104 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RN7SKP258-201ENST00000517151 304 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.73□□□□□ -1.97
USP28Q96RU2 AL133241.1-201ENST00000556832 487 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.73□□□□□ -1.97
USP28Q96RU2 MIR4775-201ENST00000581168 75 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 MIR4801-201ENST00000582704 82 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 BNIP3P30-201ENST00000601184 574 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AP000907.4-201ENST00000604143 237 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC104237.2-201ENST00000612456 443 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC011155.2-201ENST00000623202 216 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC025034.2-201ENST00000623264 286 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.73□□□□□ -1.97
USP28Q96RU2 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.73□□□□□ -1.97
USP28Q96RU2 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC016717.2-201ENST00000609089 5141 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP28Q96RU2 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
USP28Q96RU2 RNA5SP68-201ENST00000363885 119 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 RNU4-48P-201ENST00000365559 182 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 SNORA69-201ENST00000383895 132 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 Y_RNA.402-201ENST00000383972 102 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 U3.37-201ENST00000408528 213 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 RNU6-908P-201ENST00000410160 94 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 RNA5SP184-201ENST00000411071 108 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 OR51A5P-201ENST00000415429 942 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 Z85995.1-201ENST00000415547 335 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.72□□□□□ -1.97
USP28Q96RU2 USP9YP27-201ENST00000418455 438 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 BTF3L4P3-201ENST00000418879 476 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC006020.1-201ENST00000420179 1854 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.72□□□□□ -1.97
USP28Q96RU2 TIMM9P3-201ENST00000428659 274 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC007919.1-201ENST00000429380 217 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 MTND1P2-201ENST00000430604 821 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.72□□□□□ -1.97
USP28Q96RU2 AC104389.3-201ENST00000445629 235 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL118520.1-201ENST00000450770 291 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 FGF7P6-202ENST00000451282 293 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.72□□□□□ -1.97
USP28Q96RU2 RNU7-63P-201ENST00000459054 62 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AP000852.1-201ENST00000472460 573 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.72□□□□□ -1.97
USP28Q96RU2 AC026436.1-201ENST00000510537 270 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 RNU6-1281P-201ENST00000516223 105 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 RNA5SP148-201ENST00000516527 94 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 SNORA31.15-201ENST00000516771 132 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.72□□□□□ -1.97
USP28Q96RU2 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.72□□□□□ -1.97
USP28Q96RU2 MTND1P35-201ENST00000526739 508 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AP005435.4-201ENST00000529514 284 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 AC027176.1-201ENST00000560204 514 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC002545.1-201ENST00000592511 181 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.6-201ENST00000603753 252 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.11-201ENST00000604059 253 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC008162.1-201ENST00000604718 254 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.1-201ENST00000604752 252 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.5-201ENST00000605253 252 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.12-201ENST00000605291 253 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.8-201ENST00000605353 252 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL670379.7-201ENST00000605823 252 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP28Q96RU2 AC130324.3-201ENST00000614165 542 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AL354950.2-201ENST00000617939 290 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 MIR1321-201ENST00000637766 79 ntBASIC2.72□□□□□ -1.97
USP28Q96RU2 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.72□□□□□ -1.97
USP28Q96RU2 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
USP28Q96RU2 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.72□□□□□ -1.97
USP28Q96RU2 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms