Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 SNORA25.11-201ENST00000515935 105 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 RNU4-29P-201ENST00000515943 174 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 RNA5SP148-201ENST00000516527 94 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 Y_RNA.689-201ENST00000516589 107 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 SNORA31.25-201ENST00000517242 134 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AP003122.3-201ENST00000526316 255 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC084851.1-201ENST00000529105 249 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 MIR3913-1-201ENST00000577744 102 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AP005136.1-201ENST00000579765 429 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC110760.3-201ENST00000598794 467 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC119751.7-201ENST00000600494 245 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC010620.1-201ENST00000601088 1102 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC007938.3-201ENST00000604965 623 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AL133173.2-201ENST00000614270 90 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 Z99571.1-201ENST00000636677 394 ntBASIC2.33□□□□□ -2.04
VPS39Q96JC1 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS39Q96JC1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS39Q96JC1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS39Q96JC1 Y_RNA.22-201ENST00000362492 102 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 RNU6-960P-201ENST00000364056 120 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 RNU6-169P-201ENST00000365336 107 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 Y_RNA.510-201ENST00000384511 114 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 MIR301A-201ENST00000385261 86 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 BX295541.1-201ENST00000417774 250 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC009961.2-201ENST00000435771 251 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL353706.1-201ENST00000436728 494 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 USP9YP29-201ENST00000445112 563 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 PSPHP1-201ENST00000450062 261 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 MTCYBP1-201ENST00000454315 1119 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC093899.1-201ENST00000457984 376 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 SNORD97-201ENST00000459187 142 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC117503.1-201ENST00000472241 394 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC023194.1-201ENST00000493084 308 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC117522.2-201ENST00000510049 657 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC117532.1-201ENST00000514638 323 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 RNU2-10P-201ENST00000516375 211 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 SCARNA24.1-201ENST00000516465 137 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC079598.5-201ENST00000547460 117 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 PRELID2P1-201ENST00000552837 301 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC137800.2-201ENST00000574375 120 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 MIR3126-201ENST00000577443 74 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 SEPT7P9-203ENST00000604116 343 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC104763.2-201ENST00000604179 382 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL121992.2-201ENST00000606262 256 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AP002360.4-201ENST00000606980 481 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC022893.3-201ENST00000607665 437 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AC138627.2-201ENST00000624202 601 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL160394.1-201ENST00000624765 724 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 MTND5P42-201ENST00000637720 498 ntBASIC2.32□□□□□ -2.04
VPS39Q96JC1 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS39Q96JC1 AL136360.1-201ENST00000503377 1900 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 FGF7P2-201ENST00000332473 296 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 SNORA20.2-201ENST00000383922 131 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RNY3P9-201ENST00000384727 106 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RNU6-248P-201ENST00000410720 107 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC006366.1-201ENST00000422002 759 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RPL31P35-201ENST00000431058 377 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RPS15AP28-201ENST00000435088 386 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC009238.1-201ENST00000442165 424 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC009237.6-201ENST00000446969 424 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 AL033528.1-201ENST00000453780 140 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC055731.1-201ENST00000474387 401 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC007182.2-201ENST00000489251 402 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC234781.5-201ENST00000508429 271 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RNU6-572P-201ENST00000516724 80 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC009902.1-201ENST00000519351 183 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 RPL7P20-201ENST00000520308 745 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC025755.1-201ENST00000521306 278 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 MTND2P38-201ENST00000522536 667 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AP000889.2-201ENST00000532684 490 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC234778.2-201ENST00000566241 354 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC078899.2-201ENST00000595282 212 ntBASIC2.31□□□□□ -2.04
VPS39Q96JC1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS39Q96JC1 AL365204.3-201ENST00000612448 685 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms