Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RMST_4.1-201ENST00000616886 107 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC005609.4-201ENST00000625071 447 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AC004944.1-201ENST00000517807 3059 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 MTND5P30-201ENST00000452896 1731 ntBASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
RPUSD4Q96CM3 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SNORD14B-201ENST00000364533 90 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SNORA51.11-201ENST00000384442 131 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SNORA44-201ENST00000384584 132 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SNORA41-201ENST00000384675 132 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 RNU6-19P-201ENST00000384718 107 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 CISD1P1-201ENST00000393907 327 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 MTCO2P34-201ENST00000421994 607 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL365338.1-201ENST00000422282 858 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 MTCO2P11-201ENST00000431069 680 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 MTATP6P26-201ENST00000445926 662 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL360271.2-201ENST00000447710 161 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC104058.1-201ENST00000448028 297 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC080013.2-201ENST00000460866 323 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 S100A11P2-201ENST00000467589 312 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC079804.2-201ENST00000490376 200 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 RBBP4P6-201ENST00000508098 202 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC116655.1-201ENST00000508324 901 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC091133.4-201ENST00000511142 308 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SNORA31.18-201ENST00000517043 134 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 COX6CP5-201ENST00000527162 228 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL391840.1-201ENST00000571144 367 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC119751.7-201ENST00000600494 245 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC008121.1-201ENST00000603244 268 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL442067.2-201ENST00000614033 363 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC024581.2-201ENST00000619986 252 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 U4.3-201ENST00000621047 82 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC011155.2-201ENST00000623202 216 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC244517.12-201ENST00000623581 663 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AC090582.1-201ENST00000636321 199 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 AL109809.4-201ENST00000603520 2185 ntBASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
RPUSD4Q96CM3 HSPA8P4-201ENST00000511877 1920 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 SNORD114-30-201ENST00000364448 72 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 RNU6-301P-201ENST00000384277 107 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 MIR578-201ENST00000384828 96 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 MIR9-1-201ENST00000385198 89 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 U3.40-201ENST00000408706 208 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 OR6C66P-201ENST00000414917 930 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 BX295541.1-201ENST00000417774 250 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AL353621.1-201ENST00000418219 243 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC007560.1-201ENST00000426912 237 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 WARS2P1-201ENST00000429678 537 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 MTND4P32-201ENST00000437189 1237 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AL445687.1-201ENST00000439946 251 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 IGKV1OR-3-201ENST00000446944 348 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC092001.1-201ENST00000453012 261 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 BTF3P15-201ENST00000455606 336 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AL356010.1-201ENST00000456364 102 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 RNU7-182P-201ENST00000459009 62 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 RPL7P43-201ENST00000478876 753 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC018437.1-201ENST00000492214 406 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 GZMAP1-201ENST00000503054 631 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 FAM92A1P2-202ENST00000504766 877 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 MTND4P2-201ENST00000507767 1203 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 RNA5SP282-201ENST00000516355 108 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 RNU5B-3P-201ENST00000516601 115 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 ACA59.2-201ENST00000517061 156 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 FAM92A1P1-201ENST00000528023 890 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC091834.1-201ENST00000614543 472 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AC010378.1-201ENST00000619270 362 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 SEPT14P19-203ENST00000633205 211 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 ZNF658B-202ENST00000615961 3375 ntBASIC1.95□□□□□ -2.1
RPUSD4Q96CM3 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms