Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC005261.5-201ENST00000596280 355 ntBASIC3.66□□□□□ -1.82
HPS3Q969F9 MTND4LP5-201ENST00000605152 292 ntBASIC3.66□□□□□ -1.82
HPS3Q969F9 AL355365.1-201ENST00000616480 294 ntBASIC3.66□□□□□ -1.82
HPS3Q969F9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
HPS3Q969F9 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HPS3Q969F9 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
HPS3Q969F9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.66□□□□□ -1.82
HPS3Q969F9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HPS3Q969F9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HPS3Q969F9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.66□□□□□ -1.82
HPS3Q969F9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HPS3Q969F9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.66□□□□□ -1.82
HPS3Q969F9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
HPS3Q969F9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
HPS3Q969F9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HPS3Q969F9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.65□□□□□ -1.82
HPS3Q969F9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HPS3Q969F9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.65□□□□□ -1.82
HPS3Q969F9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
HPS3Q969F9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.65□□□□□ -1.83
HPS3Q969F9 RNU6-384P-201ENST00000364900 104 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 SNORD81.2-201ENST00000365153 76 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 RNU6-198P-201ENST00000384258 104 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 MIR634-201ENST00000385208 97 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AL122016.1-201ENST00000403365 367 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AL078595.1-201ENST00000404458 226 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 RNA5SP31-201ENST00000411144 127 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.65□□□□□ -1.83
HPS3Q969F9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.65□□□□□ -1.83
HPS3Q969F9 PGBD4P6-201ENST00000421501 610 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AL353678.1-201ENST00000422735 741 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.65□□□□□ -1.83
HPS3Q969F9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.65□□□□□ -1.83
HPS3Q969F9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.65□□□□□ -1.83
HPS3Q969F9 AC087884.1-201ENST00000469738 328 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 MIR4276-201ENST00000584832 70 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.65□□□□□ -1.83
HPS3Q969F9 AC243960.4-201ENST00000600532 288 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 LARP7P1-201ENST00000605576 316 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AC087045.1-201ENST00000605856 382 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AC099778.2-201ENST00000610904 211 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 uc_338.1-201ENST00000612113 180 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 ATP5A1P2-202ENST00000616464 443 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 AC005858.4-201ENST00000623191 700 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HPS3Q969F9 AC233263.6-201ENST00000631132 1963 ntBASIC3.65□□□□□ -1.83
HPS3Q969F9 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HPS3Q969F9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 RNU1-33P-201ENST00000364249 162 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 Y_RNA.263-201ENST00000364659 114 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 RNU6-128P-201ENST00000383976 107 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 RNU6-214P-201ENST00000384130 107 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 MT-TD-201ENST00000387419 68 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 SNORA48.8-201ENST00000391324 134 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 RNA5SP229-201ENST00000410809 99 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 VN1R36P-201ENST00000414936 291 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 PDCL2P1-201ENST00000419302 352 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AC097713.2-201ENST00000430199 356 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 BTF3P15-201ENST00000455606 336 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 HMGN1P18-201ENST00000457642 277 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 RPL21P10-201ENST00000463521 490 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AP002884.2-201ENST00000471647 395 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.64□□□□□ -1.83
HPS3Q969F9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.64□□□□□ -1.83
HPS3Q969F9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.64□□□□□ -1.83
HPS3Q969F9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.64□□□□□ -1.83
HPS3Q969F9 MIR3200-201ENST00000580767 85 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.64□□□□□ -1.83
HPS3Q969F9 OR1M4P-201ENST00000589199 287 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AC021646.1-201ENST00000605469 484 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 RNU6-85P-201ENST00000605989 107 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 AC004852.3-201ENST00000614131 326 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AL161629.2-201ENST00000615347 275 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.64□□□□□ -1.83
HPS3Q969F9 AC017071.1-201ENST00000564407 2204 ntBASIC3.64□□□□□ -1.83
HPS3Q969F9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HPS3Q969F9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HPS3Q969F9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
HPS3Q969F9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.63□□□□□ -1.83
HPS3Q969F9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.63□□□□□ -1.83
HPS3Q969F9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.63□□□□□ -1.83
HPS3Q969F9 AL359672.1-201ENST00000442302 409 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 RN7SL442P-201ENST00000473804 320 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 HMGN2P13-201ENST00000476476 274 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 RPS27AP10-201ENST00000496103 208 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 RNU6-273P-201ENST00000516937 96 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 RNU6-711P-201ENST00000517255 106 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 SCOCP1-201ENST00000554676 349 ntBASIC3.63□□□□□ -1.83
HPS3Q969F9 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 147.4 ms