Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 SNORA4.1-201ENST00000364263 144 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 SNORA25.9-201ENST00000365087 128 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 U8.14-201ENST00000390843 143 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC004965.1-201ENST00000413033 213 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 BTF3L4P3-201ENST00000418879 476 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC092648.1-201ENST00000425870 423 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 FABP5P14-201ENST00000437273 393 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 MTND3P1-201ENST00000441336 220 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 BRK1P2-201ENST00000442875 223 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 PPP1R2P5-201ENST00000457256 603 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC107032.1-201ENST00000485945 480 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC093281.2-201ENST00000510153 597 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC105185.1-201ENST00000518705 535 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 DEFB108A-201ENST00000530110 222 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC068587.4-201ENST00000533893 186 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AL161670.1-201ENST00000554348 137 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 ROCK1P1-201ENST00000573767 549 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 MIR4509-3-201ENST00000578671 94 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 MIR4509-2-201ENST00000583920 94 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC106052.1-201ENST00000608029 497 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AL157392.4-201ENST00000609756 345 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC068944.2-201ENST00000610373 403 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 MIR4509-1-201ENST00000618224 94 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC013470.4-201ENST00000619978 986 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AL136313.1-201ENST00000624804 202 ntBASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
LMX1AQ8TE12 AC092125.1-201ENST00000562568 1995 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 SNORA7.1-201ENST00000363750 139 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 MIR499A-201ENST00000384903 122 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 NDUFS5P1-201ENST00000405668 289 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC078974.1-201ENST00000411597 223 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AL354695.1-201ENST00000427935 228 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 USP9YP24-201ENST00000434374 697 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AL161651.1-201ENST00000440882 223 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 USP9YP17-201ENST00000444617 696 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 USP9YP25-201ENST00000457708 443 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC018437.1-201ENST00000492214 406 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC139453.3-201ENST00000493276 369 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 MTCYBP43-201ENST00000513621 740 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 CBX3P7-201ENST00000532876 502 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 VN1R82P-201ENST00000601481 356 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AL358072.1-201ENST00000604156 575 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AP000484.1-201ENST00000620067 1252 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AL356596.1-201ENST00000624230 379 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC007490.1-201ENST00000624321 703 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC091965.5-201ENST00000624785 342 ntBASIC1.47□□□□□ -2.17
LMX1AQ8TE12 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LMX1AQ8TE12 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU6-931P-201ENST00000363850 107 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU4-13P-201ENST00000364019 141 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU5A-8P-201ENST00000364102 114 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU6-512P-201ENST00000364438 103 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 Y_RNA.327-201ENST00000365201 102 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU6-157P-201ENST00000383957 107 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU6-636P-201ENST00000384598 107 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 MIR147B-201ENST00000390185 80 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU6-757P-201ENST00000410334 100 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RNU2-63P-201ENST00000410792 194 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 USP9YP6-201ENST00000413550 854 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 EDDM3CP-201ENST00000415977 425 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 XKRYP1-201ENST00000423438 492 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.46□□□□□ -2.18
LMX1AQ8TE12 RPL36AP53-201ENST00000432891 316 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 XKRYP2-201ENST00000432915 492 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 PTENP1-201ENST00000447117 1215 ntBASIC1.46□□□□□ -2.18
LMX1AQ8TE12 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms