Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNORD19.2-201ENST00000516978 73 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC026407.1-201ENST00000518369 204 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 MTCYBP20-201ENST00000524239 1129 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC007834.2-201ENST00000536310 343 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 NACAP3-201ENST00000552100 481 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 MIR3913-1-201ENST00000577744 102 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 MIR1273C-201ENST00000578669 77 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 BNIP3P8-201ENST00000597863 560 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC174048.1-201ENST00000603389 144 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AL355598.1-201ENST00000604169 202 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 APOOP1-201ENST00000604695 592 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AL033523.1-201ENST00000605153 153 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC012409.4-201ENST00000612923 249 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC025034.2-201ENST00000623264 286 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC091931.1-201ENST00000623488 728 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 MIR3199-2-201ENST00000636243 86 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 CENPCP1-201ENST00000533085 2578 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 FGF7P2-201ENST00000332473 296 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 SNORA20.2-201ENST00000383922 131 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 SNORD116-8-201ENST00000384365 95 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 MIR483-201ENST00000385070 76 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 CISD1P1-201ENST00000393907 327 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 RPS4XP8-201ENST00000402039 771 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 MTCO2P34-201ENST00000421994 607 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AL160275.3-201ENST00000423876 471 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 ISCA1P6-201ENST00000427740 390 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 MED13P1-201ENST00000428342 171 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 RPL30P4-201ENST00000429309 333 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 MICF-203ENST00000432679 129 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC236972.1-201ENST00000433225 199 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 RPS24P1-201ENST00000438550 371 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 EEF1B2P7-201ENST00000451177 676 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AL583843.1-201ENST00000456070 346 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 KLF3P2-201ENST00000465138 268 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC128713.1-201ENST00000471495 306 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 BET1P1-201ENST00000482276 359 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC096576.1-201ENST00000489014 359 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC022447.1-201ENST00000515358 464 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC011979.2-201ENST00000527568 352 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 MIR5571-201ENST00000577998 113 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 NIFKP6-201ENST00000598115 845 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC064872.1-201ENST00000604823 1072 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC098614.4-201ENST00000607601 462 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC046143.2-201ENST00000609789 160 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AL161423.1-201ENST00000613700 262 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 AC008250.2-201ENST00000615261 205 ntBASIC1.93□□□□□ -2.1
CCDC54Q8NEL0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RNU6-942P-201ENST00000363002 107 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 SNORA5B-201ENST00000363786 132 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RNA5SP387-201ENST00000364226 106 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RNU6-371P-201ENST00000364283 108 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RNU6-282P-201ENST00000365357 103 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RNU6-74P-201ENST00000384235 107 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 MIR218-1-201ENST00000384999 110 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AL133475.1-201ENST00000404414 305 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 CYCSP48-201ENST00000417124 323 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC009518.2-201ENST00000418056 731 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RPL31P35-201ENST00000431058 377 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC018634.1-201ENST00000437554 401 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC079448.1-201ENST00000449377 373 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 RPL23AP49-201ENST00000492925 468 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC098862.1-201ENST00000504991 413 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC116655.1-201ENST00000508324 901 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 MTCO3P28-201ENST00000513351 515 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 OSBPL9P5-201ENST00000542581 171 ntBASIC1.92□□□□□ -2.1
CCDC54Q8NEL0 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms