Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 TGIF1P1-201ENST00000558095 802 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 MIR7851-201ENST00000610611 160 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 MIR6076-201ENST00000617521 113 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC010378.1-201ENST00000619270 362 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 AC098657.3-201ENST00000620434 263 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 Z69720.2-201ENST00000624755 279 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 MFSD8-233ENST00000641482 4860 ntBASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.37□□□□□ -1.87
PTCHD3Q3KNS1 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC138393.1-203ENST00000327086 343 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RNU4-35P-201ENST00000362588 141 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MTCYBP4-201ENST00000401524 249 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RNU4-14P-201ENST00000410858 122 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-293P-201ENST00000411259 106 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-954P-201ENST00000411355 107 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 TOMM20P4-201ENST00000427861 435 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC097713.2-201ENST00000430199 356 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RPL23AP83-201ENST00000434984 473 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL590664.1-201ENST00000448065 339 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RPL21P10-201ENST00000463521 490 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC008155.2-201ENST00000464337 397 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RPL32P34-201ENST00000486380 400 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 Y_RNA.718-201ENST00000517110 102 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MIR4782-201ENST00000577987 79 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MIR5047-201ENST00000579212 100 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MIR4425-201ENST00000580572 84 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 MIR3609-201ENST00000582661 80 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AC091152.2-201ENST00000591628 2569 ntBASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PTCHD3Q3KNS1 AL513302.2-201ENST00000562313 1842 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC032011.1-201ENST00000611703 1549 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 PWAR6-201ENST00000552334 4618 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 SRP72P2-201ENST00000344851 1979 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 Y_RNA.259-201ENST00000364619 101 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 RNU6-95P-201ENST00000384697 107 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 MIR10A-201ENST00000385043 110 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC007560.1-201ENST00000426912 237 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 RNU1-103P-201ENST00000516502 125 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AL442663.2-201ENST00000554385 511 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 MIR5690-201ENST00000583739 73 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AL138880.2-201ENST00000616214 239 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 MTND5P1-201ENST00000445440 1375 ntBASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
PTCHD3Q3KNS1 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 SNORD62.1-201ENST00000362541 86 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 RNU1-73P-201ENST00000383971 164 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 NDUFS5P4-201ENST00000412983 318 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 AF228730.4-201ENST00000421457 183 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 HMGN2P30-201ENST00000423237 256 ntBASIC3.34□□□□□ -1.87
PTCHD3Q3KNS1 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms