Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.22□□□□□ -1.89
CTCFP49711 RN7SL499P-201ENST00000481141 276 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AC117522.3-201ENST00000507974 584 ntBASIC3.22□□□□□ -1.89
CTCFP49711 RNU6-685P-201ENST00000517088 95 ntBASIC3.22□□□□□ -1.89
CTCFP49711 ADI1P3-201ENST00000549509 470 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.22□□□□□ -1.89
CTCFP49711 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.22□□□□□ -1.89
CTCFP49711 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.22□□□□□ -1.89
CTCFP49711 AC069234.5-201ENST00000611056 416 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AC073534.2-201ENST00000620377 381 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AC011155.2-201ENST00000623202 216 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AC005609.4-201ENST00000625071 447 ntBASIC3.22□□□□□ -1.89
CTCFP49711 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CTCFP49711 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.21□□□□□ -1.89
CTCFP49711 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CTCFP49711 RNU6-884P-201ENST00000363889 107 ntBASIC3.21□□□□□ -1.9
CTCFP49711 SNORA26.7-201ENST00000391288 122 ntBASIC3.21□□□□□ -1.9
CTCFP49711 RNU2-68P-201ENST00000410878 191 ntBASIC3.21□□□□□ -1.9
CTCFP49711 RNU6-387P-201ENST00000411331 105 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 UBE2V1P10-201ENST00000414685 269 ntBASIC3.21□□□□□ -1.9
CTCFP49711 OR51A5P-201ENST00000415429 942 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 AL356320.1-201ENST00000429616 163 ntBASIC3.21□□□□□ -1.9
CTCFP49711 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.21□□□□□ -1.9
CTCFP49711 UBBP3-201ENST00000445497 241 ntBASIC3.21□□□□□ -1.9
CTCFP49711 RNU7-182P-201ENST00000459009 62 ntBASIC3.21□□□□□ -1.9
CTCFP49711 RN7SL20P-201ENST00000488827 297 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC139453.3-201ENST00000493276 369 ntBASIC3.21□□□□□ -1.9
CTCFP49711 RAC1P5-201ENST00000512182 576 ntBASIC3.21□□□□□ -1.9
CTCFP49711 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.21□□□□□ -1.9
CTCFP49711 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.21□□□□□ -1.9
CTCFP49711 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CTCFP49711 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.21□□□□□ -1.9
CTCFP49711 AC007938.3-201ENST00000604965 623 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AL158032.1-201ENST00000605401 106 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.21□□□□□ -1.9
CTCFP49711 AC084782.3-201ENST00000612282 578 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC104237.2-201ENST00000612456 443 ntBASIC3.21□□□□□ -1.9
CTCFP49711 DUSP12P1-201ENST00000612874 516 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC007318.2-201ENST00000620999 243 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC068792.1-201ENST00000621354 417 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AL359880.1-201ENST00000621879 266 ntBASIC3.21□□□□□ -1.9
CTCFP49711 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.21□□□□□ -1.9
CTCFP49711 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.21□□□□□ -1.9
CTCFP49711 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CTCFP49711 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CTCFP49711 SNORD56.5-201ENST00000364281 72 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CTCFP49711 MTCO3P40-201ENST00000392516 676 ntBASIC3.2□□□□□ -1.9
CTCFP49711 CISD1P1-201ENST00000393907 327 ntBASIC3.2□□□□□ -1.9
CTCFP49711 CALM2P3-201ENST00000400429 449 ntBASIC3.2□□□□□ -1.9
CTCFP49711 MTCYBP5-201ENST00000423752 1135 ntBASIC3.2□□□□□ -1.9
CTCFP49711 SKA2P1-201ENST00000425592 390 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.2□□□□□ -1.9
CTCFP49711 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.2□□□□□ -1.9
CTCFP49711 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.2□□□□□ -1.9
CTCFP49711 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.2□□□□□ -1.9
CTCFP49711 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.2□□□□□ -1.9
CTCFP49711 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.2□□□□□ -1.9
CTCFP49711 AL356010.1-201ENST00000456364 102 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AL162395.1-201ENST00000457882 422 ntBASIC3.2□□□□□ -1.9
CTCFP49711 RPS29P15-201ENST00000458329 171 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.2□□□□□ -1.9
CTCFP49711 RNU6-1315P-201ENST00000517187 99 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.2□□□□□ -1.9
CTCFP49711 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.2□□□□□ -1.9
CTCFP49711 AP003034.1-201ENST00000534621 422 ntBASIC3.2□□□□□ -1.9
CTCFP49711 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.2□□□□□ -1.9
CTCFP49711 AC012557.2-201ENST00000605919 418 ntBASIC3.2□□□□□ -1.9
CTCFP49711 SEPT14P19-203ENST00000633205 211 ntBASIC3.2□□□□□ -1.9
CTCFP49711 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CTCFP49711 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 OR4G2P-201ENST00000328113 903 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RNU6-778P-201ENST00000363269 103 ntBASIC3.19□□□□□ -1.9
CTCFP49711 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
CTCFP49711 Y_RNA.409-201ENST00000383990 98 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RNU6-1029P-201ENST00000384109 107 ntBASIC3.19□□□□□ -1.9
CTCFP49711 Y_RNA.516-201ENST00000384541 124 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.19□□□□□ -1.9
CTCFP49711 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.19□□□□□ -1.9
CTCFP49711 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AL160275.3-201ENST00000423876 471 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 Z96811.1-201ENST00000445880 108 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RPL23AP20-201ENST00000447965 421 ntBASIC3.19□□□□□ -1.9
CTCFP49711 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CTCFP49711 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.19□□□□□ -1.9
CTCFP49711 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AC126182.1-201ENST00000478134 357 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RPL9P33-201ENST00000484311 566 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.19□□□□□ -1.9
CTCFP49711 AC009901.1-201ENST00000506703 541 ntBASIC3.19□□□□□ -1.9
CTCFP49711 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.19□□□□□ -1.9
CTCFP49711 AC104806.1-201ENST00000508720 308 ntBASIC3.19□□□□□ -1.9
CTCFP49711 RNA5SP76-201ENST00000516277 87 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms