Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA1P49639 NUTF2P8-201ENST00000604593 363 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 uc_338.5-201ENST00000611839 155 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 uc_338.15-201ENST00000615470 191 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA1P49639 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
HOXA1P49639 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
HOXA1P49639 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.72□□□□□ -1.97
HOXA1P49639 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA1P49639 SNORD113-7-201ENST00000363762 77 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXA1P49639 RNU6-658P-201ENST00000384606 106 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 FAT1P1-201ENST00000406588 507 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 MIR548F5-201ENST00000408421 86 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 SNORD88.1-201ENST00000408684 91 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 RNU6ATAC-201ENST00000408749 126 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 RNA5SP44-201ENST00000410446 133 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 RNU4-14P-201ENST00000410858 122 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 VN1R36P-201ENST00000414936 291 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AL035423.1-201ENST00000420331 213 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC007389.2-201ENST00000434630 306 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXA1P49639 snoU109.2-201ENST00000459316 135 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC008571.1-201ENST00000467232 300 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXA1P49639 RPS27AP9-201ENST00000477681 438 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AIG1P1-201ENST00000503376 148 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA1P49639 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXA1P49639 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXA1P49639 MTND3P22-201ENST00000510932 243 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 RNU6-277P-201ENST00000516272 106 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXA1P49639 COPS8P3-201ENST00000526024 482 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AP000889.2-201ENST00000532684 490 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA1P49639 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.72□□□□□ -1.97
HOXA1P49639 AC073544.1-201ENST00000600110 1595 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC138627.2-201ENST00000624202 601 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 AC099654.5-201ENST00000636479 350 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 U6.99-201ENST00000637524 83 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 MIR1302-1-201ENST00000637932 143 ntBASIC2.72□□□□□ -1.97
HOXA1P49639 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA1P49639 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA1P49639 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
HOXA1P49639 Y_RNA.212-201ENST00000364177 102 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 SNORD14B-201ENST00000364533 90 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 Y_RNA.324-201ENST00000365165 102 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AL359837.1-201ENST00000381357 287 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RNU6-166P-201ENST00000384371 107 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 Y_RNA.509-201ENST00000384506 99 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 MIR10A-201ENST00000385043 110 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 SNORA40C-201ENST00000391285 128 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 MIR1193-201ENST00000408109 78 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RN7SKP202-201ENST00000410439 330 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC245054.2-201ENST00000415639 319 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXA1P49639 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 RPL7P37-201ENST00000425095 738 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 CST9LP2-201ENST00000437612 320 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 MTND4LP16-201ENST00000440828 295 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC092798.1-201ENST00000458542 409 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC011005.2-201ENST00000487324 359 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXA1P49639 MIR892C-201ENST00000516410 77 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RNU1-103P-201ENST00000516502 125 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RNU6-1282P-201ENST00000516735 96 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 SCARNA20.6-201ENST00000517251 106 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC104576.1-201ENST00000524225 88 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC011611.1-201ENST00000552179 197 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.71□□□□□ -1.98
HOXA1P49639 AL355375.2-201ENST00000574825 175 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 MIR3941-201ENST00000582572 103 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXA1P49639 AL020997.2-201ENST00000602607 184 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC024220.1-201ENST00000603675 484 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AL645944.1-201ENST00000603857 493 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AP000787.2-201ENST00000604432 568 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RNU6-85P-201ENST00000605989 107 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXA1P49639 AC104237.2-201ENST00000612456 443 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AL355365.1-201ENST00000616480 294 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 AC034229.5-201ENST00000624258 185 ntBASIC2.71□□□□□ -1.98
HOXA1P49639 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXA1P49639 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXA1P49639 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXA1P49639 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms