Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.13□□□□□ -1.91
PTPN9P43378 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PTPN9P43378 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.13□□□□□ -1.91
PTPN9P43378 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PTPN9P43378 GABRG2-229ENST00000641017 3628 ntBASIC3.13□□□□□ -1.91
PTPN9P43378 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTPN9P43378 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTPN9P43378 Y_RNA.86-201ENST00000363020 111 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 SNORA71.1-201ENST00000364523 117 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 Y_RNA.279-201ENST00000364763 95 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 Y_RNA.378-201ENST00000365652 113 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 RNY3P14-201ENST00000384309 102 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PTPN9P43378 RNU6-876P-201ENST00000391295 104 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 RPLP0P7-201ENST00000416050 667 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 RPL21P111-201ENST00000418453 477 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AL513185.2-201ENST00000425543 193 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.12□□□□□ -1.91
PTPN9P43378 AL627311.1-201ENST00000431514 115 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 HIGD1AP11-201ENST00000438361 280 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.12□□□□□ -1.91
PTPN9P43378 AL353572.1-201ENST00000442490 417 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AL078601.1-201ENST00000444542 271 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 MTND4P18-201ENST00000447010 465 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC007547.1-201ENST00000462177 490 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.12□□□□□ -1.91
PTPN9P43378 AC011005.2-201ENST00000487324 359 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC139453.3-201ENST00000493276 369 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 MTCO2P30-201ENST00000503662 364 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 FAM206BP-201ENST00000510179 541 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC010486.1-201ENST00000511793 424 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 SNORD59.2-201ENST00000516873 68 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 SNORA70.24-201ENST00000517233 118 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 SNORA31.26-201ENST00000517250 137 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.12□□□□□ -1.91
PTPN9P43378 PSMA3P-201ENST00000555485 635 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.12□□□□□ -1.91
PTPN9P43378 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.12□□□□□ -1.91
PTPN9P43378 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.12□□□□□ -1.91
PTPN9P43378 BNIP3P25-201ENST00000596023 559 ntBASIC3.12□□□□□ -1.91
PTPN9P43378 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.12□□□□□ -1.91
PTPN9P43378 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PTPN9P43378 AC008264.2-201ENST00000610193 3731 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.11□□□□□ -1.91
PTPN9P43378 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTPN9P43378 Y_RNA.160-201ENST00000363677 92 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 RNU6-1179P-201ENST00000384667 107 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 EIF4E2P1-201ENST00000393781 255 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AL162578.1-201ENST00000406202 378 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 RNU2-3P-201ENST00000410144 191 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 Y_RNA.623-201ENST00000411128 95 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 USP9YP20-201ENST00000419224 558 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 HSPE1P1-201ENST00000421494 318 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 SKA2P1-201ENST00000425592 390 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AC093151.1-201ENST00000427711 313 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PTPN9P43378 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.11□□□□□ -1.91
PTPN9P43378 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.11□□□□□ -1.91
PTPN9P43378 AC010099.1-201ENST00000455434 375 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AC092798.1-201ENST00000458542 409 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 TRBVA-201ENST00000498804 316 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.11□□□□□ -1.91
PTPN9P43378 RNU1-103P-201ENST00000516502 125 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 RN7SKP272-201ENST00000516988 232 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 SNORA31.19-201ENST00000517079 126 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 RNU6-1314P-201ENST00000517139 104 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 RNU6-711P-201ENST00000517255 106 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.11□□□□□ -1.91
PTPN9P43378 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.11□□□□□ -1.91
PTPN9P43378 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.11□□□□□ -1.91
PTPN9P43378 AC023050.3-201ENST00000541142 333 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 NACAP3-201ENST00000552100 481 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.11□□□□□ -1.91
PTPN9P43378 AL391261.3-201ENST00000557194 520 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 VN1R80P-201ENST00000597126 338 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AC092747.3-201ENST00000603769 301 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.11□□□□□ -1.91
PTPN9P43378 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PTPN9P43378 AL442067.2-201ENST00000614033 363 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 AC090617.10-201ENST00000624308 134 ntBASIC3.11□□□□□ -1.91
PTPN9P43378 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PTPN9P43378 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
PTPN9P43378 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PTPN9P43378 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
PTPN9P43378 RNU6-884P-201ENST00000363889 107 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 SNORD14B-201ENST00000364533 90 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 SNORA14A-201ENST00000364773 135 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 Y_RNA.303-201ENST00000364998 94 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 U8.9-201ENST00000365667 134 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 RNU6-166P-201ENST00000384371 107 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
PTPN9P43378 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
PTPN9P43378 SNORA11.1-201ENST00000408133 129 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 Y_RNA.615-201ENST00000410769 117 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.1□□□□□ -1.91
PTPN9P43378 AL645937.1-202ENST00000421799 937 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.1□□□□□ -1.91
PTPN9P43378 AL714022.1-201ENST00000439897 151 ntBASIC3.1□□□□□ -1.91
PTPN9P43378 AL590639.1-201ENST00000456484 337 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms