Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPL39P36-201ENST00000490784 156 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXC9P31274 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC9P31274 RNU6-718P-201ENST00000516166 105 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC9P31274 RANP3-201ENST00000530970 276 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 ZNF519P2-201ENST00000557032 169 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 HMGB1P33-201ENST00000563485 527 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 MIR4775-201ENST00000581168 75 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 MTATP6P3-201ENST00000581686 676 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 MIR4769-201ENST00000584126 77 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC008521.1-201ENST00000587471 187 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 BNIP3P9-201ENST00000603714 553 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC9P31274 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC9P31274 MIR6076-201ENST00000617521 113 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AL354950.2-201ENST00000617939 290 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC011155.2-201ENST00000623202 216 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 Z99571.1-201ENST00000636677 394 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXC9P31274 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC9P31274 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC9P31274 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC9P31274 RNU6-1090P-201ENST00000364065 94 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RNU1-91P-201ENST00000364746 163 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RNU6-116P-201ENST00000384042 109 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RNU6-140P-201ENST00000384566 108 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 MIR764-201ENST00000390811 85 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXC9P31274 MTCYBP8-201ENST00000422855 651 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC9P31274 ZNF863P-201ENST00000426746 417 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 TIMM9P3-201ENST00000428659 274 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RPL36AP53-201ENST00000432891 316 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC9P31274 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC9P31274 RPL12P25-201ENST00000455592 494 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXC9P31274 Y_RNA.693-201ENST00000516641 110 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RNU6-914P-201ENST00000516749 109 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 RNU6-143P-201ENST00000516942 93 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AC104383.1-201ENST00000530297 370 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXC9P31274 AC025281.1-201ENST00000567026 265 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC9P31274 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXC9P31274 HSPE1P7-201ENST00000604681 321 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AP001330.5-201ENST00000607176 411 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 MIR15A-201ENST00000607334 83 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AC093788.1-201ENST00000609356 927 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 U4.5-201ENST00000617137 123 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AC005609.4-201ENST00000625071 447 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AC241585.2-209ENST00000638217 143 ntBASIC3.09□□□□□ -1.91
HOXC9P31274 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
HOXC9P31274 SNORD114-1-201ENST00000362705 72 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNU6-1322P-201ENST00000364309 107 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNU6-483P-201ENST00000384088 108 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HOXC9P31274 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HOXC9P31274 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HOXC9P31274 SNORD115-47-201ENST00000391226 86 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC9P31274 RNA5SP38-201ENST00000410750 119 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXC9P31274 AL513477.1-202ENST00000417061 214 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 HSPE1P1-201ENST00000421494 318 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 HMGN2P3-201ENST00000433603 273 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RPS15AP28-201ENST00000435088 386 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 HMGN2P5-201ENST00000436882 273 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 MTND1P18-201ENST00000448191 573 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AL356010.1-201ENST00000456364 102 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNU6-420P-201ENST00000458780 107 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNU6-1282P-201ENST00000516735 96 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 RNA5SP165-201ENST00000517142 115 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC9P31274 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC9P31274 SNRPGP18-201ENST00000553000 214 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC025678.1-201ENST00000567861 338 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AL133393.1-201ENST00000603277 287 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC174048.1-201ENST00000603389 144 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC107304.1-201ENST00000604229 296 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC004805.2-201ENST00000605382 482 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 AC073308.1-201ENST00000623696 305 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 CKAP2P1-201ENST00000555477 2049 ntBASIC3.08□□□□□ -1.92
HOXC9P31274 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXC9P31274 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC9P31274 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC9P31274 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC9P31274 RNU6-996P-201ENST00000365438 107 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 Y_RNA.481-201ENST00000384373 102 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC9P31274 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms