Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.29□□□□□ -2.36
HMGA1P17096 AC024595.1-201ENST00000623088 387 ntBASIC0.29□□□□□ -2.36
HMGA1P17096 MTCO1P23-201ENST00000415223 1526 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 AC121333.1-201ENST00000567488 2709 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 RNU4-31P-201ENST00000384211 141 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGA1P17096 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGA1P17096 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.28□□□□□ -2.36
HMGA1P17096 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGA1P17096 FCF1P6-201ENST00000456841 595 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.28□□□□□ -2.36
HMGA1P17096 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.28□□□□□ -2.36
HMGA1P17096 FAM60CP-201ENST00000591086 664 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 AC080013.4-201ENST00000607624 649 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 MIR8065-201ENST00000620577 100 ntBASIC0.28□□□□□ -2.36
HMGA1P17096 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
HMGA1P17096 RNU6-882P-201ENST00000391025 103 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 MIR1303-201ENST00000408625 86 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 AC244023.1-201ENST00000426884 112 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.27□□□□□ -2.37
HMGA1P17096 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 RNU4-54P-201ENST00000516428 129 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.27□□□□□ -2.37
HMGA1P17096 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.27□□□□□ -2.37
HMGA1P17096 MIR4514-201ENST00000581410 57 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 CYP2C61P-201ENST00000604072 290 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 AC242498.1-201ENST00000604134 111 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 BX284668.6-201ENST00000606899 438 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.27□□□□□ -2.37
HMGA1P17096 AC243994.1-201ENST00000618627 109 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 AC009509.4-201ENST00000619202 509 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.27□□□□□ -2.37
HMGA1P17096 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.27□□□□□ -2.37
HMGA1P17096 MIR608-201ENST00000384820 100 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGA1P17096 MED14P1-201ENST00000430517 648 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC073614.1-201ENST00000438690 650 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 MTCO1P53-201ENST00000441633 699 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC244505.3-201ENST00000454598 187 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC092757.1-201ENST00000467293 467 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 LARP1BP2-201ENST00000486594 519 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 RNU6-1095P-201ENST00000516148 108 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC092451.2-201ENST00000538746 658 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGA1P17096 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.26□□□□□ -2.37
HMGA1P17096 AC090079.2-201ENST00000575289 768 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AC008751.2-201ENST00000597885 980 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AL713866.2-201ENST00000603579 219 ntBASIC0.26□□□□□ -2.37
HMGA1P17096 AL138713.1-201ENST00000624026 2130 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
HMGA1P17096 AL359854.1-201ENST00000614203 1594 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 RNU1-23P-201ENST00000363361 144 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 SNORD18A-201ENST00000363753 72 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 SNORD1A-201ENST00000364968 72 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 MTCO1P56-201ENST00000401674 224 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 AL591034.2-201ENST00000402839 359 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 MIR1197-201ENST00000408818 88 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.25□□□□□ -2.37
HMGA1P17096 AC024082.2-201ENST00000434771 238 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 MTND4LP10-201ENST00000435146 291 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 OR6C7P-201ENST00000547875 934 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 AC027335.2-201ENST00000624030 375 ntBASIC0.25□□□□□ -2.37
HMGA1P17096 RNU5E-1-201ENST00000362477 120 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 SNORA63.3-201ENST00000362682 132 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 Y_RNA.115-201ENST00000363272 98 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 RNA5SP457-201ENST00000363657 124 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.24□□□□□ -2.37
HMGA1P17096 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.24□□□□□ -2.37
HMGA1P17096 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.24□□□□□ -2.37
HMGA1P17096 AC078974.1-201ENST00000411597 223 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.24□□□□□ -2.37
HMGA1P17096 AC139712.2-201ENST00000424302 339 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC027119.1-201ENST00000440877 241 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
HMGA1P17096 AC018868.1-201ENST00000491307 315 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AL163195.1-201ENST00000496941 348 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC074344.1-201ENST00000512823 224 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.24□□□□□ -2.37
HMGA1P17096 AC105224.1-201ENST00000587055 421 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AL391813.1-201ENST00000603098 260 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC023932.2-201ENST00000603176 175 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC010738.1-201ENST00000604970 987 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 AC007349.4-201ENST00000608114 532 ntBASIC0.24□□□□□ -2.37
HMGA1P17096 RNU6-1164P-201ENST00000364428 107 ntBASIC0.23□□□□□ -2.37
HMGA1P17096 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.23□□□□□ -2.37
HMGA1P17096 SNORA25-201ENST00000384384 134 ntBASIC0.23□□□□□ -2.37
HMGA1P17096 MIR625-201ENST00000385047 85 ntBASIC0.23□□□□□ -2.37
HMGA1P17096 MRPL35P1-201ENST00000404272 572 ntBASIC0.23□□□□□ -2.37
HMGA1P17096 MIR1267-201ENST00000408723 78 ntBASIC0.23□□□□□ -2.37
HMGA1P17096 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.23□□□□□ -2.37
HMGA1P17096 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms