Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC0.48□□□□□ -2.33
HMGN4O00479 SULT1C2P1-202ENST00000562418 459 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 LINC00557-201ENST00000563184 1279 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 AC115989.2-201ENST00000578640 563 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 AL020997.3-201ENST00000602843 359 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 MIR6504-201ENST00000613520 61 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 AC073569.3-201ENST00000619055 682 ntBASIC0.48□□□□□ -2.33
HMGN4O00479 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
HMGN4O00479 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
HMGN4O00479 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.47□□□□□ -2.33
HMGN4O00479 RNA5SP499-201ENST00000363982 119 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 RNU6-77P-201ENST00000410554 91 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 TPMTP3-201ENST00000411928 735 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 MTCYBP38-201ENST00000417160 1123 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 PRELID3BP1-201ENST00000457142 540 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AL441985.1-201ENST00000457727 251 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 SNRPFP3-201ENST00000457792 225 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AC010409.1-201ENST00000487382 476 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 RNVU1-2-201ENST00000516326 135 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.47□□□□□ -2.33
HMGN4O00479 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.47□□□□□ -2.33
HMGN4O00479 AL121821.2-201ENST00000556081 394 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.47□□□□□ -2.33
HMGN4O00479 CYP3A52P-201ENST00000563326 91 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 CYP4A27P-201ENST00000567218 190 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AL357094.1-201ENST00000603845 844 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 AL391646.1-201ENST00000603860 190 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 MIR8070-201ENST00000616510 88 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 MIR8063-201ENST00000621930 81 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 MIR4275-201ENST00000636486 87 ntBASIC0.47□□□□□ -2.33
HMGN4O00479 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
HMGN4O00479 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.47□□□□□ -2.33
HMGN4O00479 DDX43P2-201ENST00000604753 1354 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 SNORD33-201ENST00000362761 85 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 RNU6-414P-201ENST00000363705 104 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 RNU6-115P-201ENST00000364310 107 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 RNU6-611P-201ENST00000384276 104 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 CCNG1P1-201ENST00000406783 885 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
HMGN4O00479 AC005345.1-201ENST00000431868 217 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
HMGN4O00479 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC005951.2-201ENST00000576282 495 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 MIR3124-201ENST00000582636 67 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 AC005786.1-201ENST00000588553 154 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 AC004805.2-201ENST00000605382 482 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.46□□□□□ -2.34
HMGN4O00479 AC027335.2-201ENST00000624030 375 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 AL159972.1-201ENST00000625150 448 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 AC099654.5-201ENST00000636479 350 ntBASIC0.46□□□□□ -2.34
HMGN4O00479 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
HMGN4O00479 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGN4O00479 RPL22P22-201ENST00000395439 379 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 RNU2-64P-201ENST00000411315 191 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.45□□□□□ -2.34
HMGN4O00479 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.45□□□□□ -2.34
HMGN4O00479 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGN4O00479 AC112771.1-201ENST00000463581 102 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC087477.1-201ENST00000465747 340 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.45□□□□□ -2.34
HMGN4O00479 AL160314.1-201ENST00000490836 438 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC145146.1-201ENST00000496370 254 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC084024.2-201ENST00000503480 791 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.45□□□□□ -2.34
HMGN4O00479 PTP4A1P4-201ENST00000512479 322 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 PSMC1P5-201ENST00000512850 177 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 FABP5P5-201ENST00000515537 406 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 RNU6-889P-201ENST00000517189 103 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGN4O00479 IGJP1-201ENST00000522682 475 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AL021879.1-201ENST00000611756 288 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.45□□□□□ -2.34
HMGN4O00479 AL603758.1-201ENST00000618654 241 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AL359740.1-201ENST00000624340 592 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 AC079416.3-201ENST00000624479 549 ntBASIC0.45□□□□□ -2.34
HMGN4O00479 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.45□□□□□ -2.34
HMGN4O00479 Y_RNA.191-201ENST00000363972 113 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
HMGN4O00479 AC009518.2-201ENST00000418056 731 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 AC083875.1-201ENST00000419509 405 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 EIF1P1-201ENST00000421436 341 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 NDUFA5P7-201ENST00000452914 242 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 AC108078.1-201ENST00000508073 725 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 RNU6-322P-201ENST00000516010 103 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 AC008127.2-201ENST00000549925 1075 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 AC002545.1-201ENST00000592511 181 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 MIR8065-201ENST00000620577 100 ntBASIC0.44□□□□□ -2.34
HMGN4O00479 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
HMGN4O00479 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC0.43□□□□□ -2.34
HMGN4O00479 MIR548J-201ENST00000408833 112 ntBASIC0.43□□□□□ -2.34
HMGN4O00479 USP9YP33-201ENST00000412220 421 ntBASIC0.43□□□□□ -2.34
HMGN4O00479 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms