Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
CBX4O00257 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CBX4O00257 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.85□□□□□ -1.79
CBX4O00257 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CBX4O00257 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CBX4O00257 MTND5P7-201ENST00000413558 1798 ntBASIC3.85□□□□□ -1.79
CBX4O00257 Y_RNA.112-201ENST00000363250 102 ntBASIC3.85□□□□□ -1.79
CBX4O00257 RNA5SP31-201ENST00000411144 127 ntBASIC3.85□□□□□ -1.79
CBX4O00257 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.85□□□□□ -1.79
CBX4O00257 HIGD1AP2-201ENST00000446367 280 ntBASIC3.85□□□□□ -1.79
CBX4O00257 FTH1P25-201ENST00000447665 469 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.85□□□□□ -1.79
CBX4O00257 AL133162.1-201ENST00000463228 453 ntBASIC3.85□□□□□ -1.79
CBX4O00257 RPL32P34-201ENST00000486380 400 ntBASIC3.85□□□□□ -1.79
CBX4O00257 UBE2CP3-201ENST00000502715 450 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AC114801.2-201ENST00000503825 781 ntBASIC3.85□□□□□ -1.79
CBX4O00257 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.85□□□□□ -1.79
CBX4O00257 SCARNA16.2-201ENST00000516520 172 ntBASIC3.85□□□□□ -1.79
CBX4O00257 MIR2114-201ENST00000516645 80 ntBASIC3.85□□□□□ -1.79
CBX4O00257 RNU6-264P-201ENST00000517134 104 ntBASIC3.85□□□□□ -1.79
CBX4O00257 IGKV2-23-201ENST00000518729 323 ntBASIC3.85□□□□□ -1.79
CBX4O00257 RNU6-988P-201ENST00000519081 107 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AC022634.1-201ENST00000520765 532 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AP004607.1-201ENST00000524456 203 ntBASIC3.85□□□□□ -1.79
CBX4O00257 NACAP3-201ENST00000552100 481 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AC103996.1-201ENST00000555468 102 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AL360157.1-201ENST00000565962 87 ntBASIC3.85□□□□□ -1.79
CBX4O00257 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.85□□□□□ -1.79
CBX4O00257 AL137849.1-201ENST00000604767 169 ntBASIC3.85□□□□□ -1.79
CBX4O00257 AC008962.1-201ENST00000605729 304 ntBASIC3.85□□□□□ -1.79
CBX4O00257 SNORA62.6-201ENST00000606322 83 ntBASIC3.85□□□□□ -1.79
CBX4O00257 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.85□□□□□ -1.79
CBX4O00257 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CBX4O00257 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
CBX4O00257 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CBX4O00257 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CBX4O00257 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CBX4O00257 RNU6-1317P-201ENST00000364582 104 ntBASIC3.84□□□□□ -1.79
CBX4O00257 RNU6-596P-201ENST00000365395 98 ntBASIC3.84□□□□□ -1.79
CBX4O00257 RNU6-331P-201ENST00000384724 107 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.84□□□□□ -1.79
CBX4O00257 AC099548.1-201ENST00000421443 426 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AL137792.2-201ENST00000443484 235 ntBASIC3.84□□□□□ -1.79
CBX4O00257 RPS3AP12-201ENST00000443616 753 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC124916.1-201ENST00000444020 547 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC133134.1-201ENST00000466800 359 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.84□□□□□ -1.79
CBX4O00257 AC069499.1-201ENST00000489433 509 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.84□□□□□ -1.79
CBX4O00257 AC104619.4-201ENST00000510773 249 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.84□□□□□ -1.79
CBX4O00257 AC010186.2-204ENST00000537668 439 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.84□□□□□ -1.79
CBX4O00257 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.84□□□□□ -1.79
CBX4O00257 MIR4273-201ENST00000582824 84 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.84□□□□□ -1.79
CBX4O00257 AC244505.7-201ENST00000599675 272 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC016925.2-201ENST00000605108 242 ntBASIC3.84□□□□□ -1.79
CBX4O00257 AC040896.1-201ENST00000613819 479 ntBASIC3.84□□□□□ -1.79
CBX4O00257 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.84□□□□□ -1.79
CBX4O00257 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.84□□□□□ -1.79
CBX4O00257 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.84□□□□□ -1.8
CBX4O00257 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
CBX4O00257 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CBX4O00257 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.83□□□□□ -1.8
CBX4O00257 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CBX4O00257 RNU6-78P-201ENST00000362897 107 ntBASIC3.83□□□□□ -1.8
CBX4O00257 Y_RNA.216-201ENST00000364205 93 ntBASIC3.83□□□□□ -1.8
CBX4O00257 RNU6-842P-201ENST00000384269 107 ntBASIC3.83□□□□□ -1.8
CBX4O00257 MIR491-201ENST00000384877 84 ntBASIC3.83□□□□□ -1.8
CBX4O00257 MIR483-201ENST00000385070 76 ntBASIC3.83□□□□□ -1.8
CBX4O00257 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CBX4O00257 HLFP1-201ENST00000402375 499 ntBASIC3.83□□□□□ -1.8
CBX4O00257 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.83□□□□□ -1.8
CBX4O00257 RPL23AP82-202ENST00000427528 469 ntBASIC3.83□□□□□ -1.8
CBX4O00257 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.83□□□□□ -1.8
CBX4O00257 TRBV12-2-201ENST00000489763 344 ntBASIC3.83□□□□□ -1.8
CBX4O00257 RNU6-470P-201ENST00000515954 104 ntBASIC3.83□□□□□ -1.8
CBX4O00257 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.83□□□□□ -1.8
CBX4O00257 RNA5SP384-201ENST00000516615 116 ntBASIC3.83□□□□□ -1.8
CBX4O00257 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CBX4O00257 MTCO3P13-201ENST00000577757 781 ntBASIC3.83□□□□□ -1.8
CBX4O00257 MIR5187-201ENST00000583479 76 ntBASIC3.83□□□□□ -1.8
CBX4O00257 MIR3976-201ENST00000606807 139 ntBASIC3.83□□□□□ -1.8
CBX4O00257 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CBX4O00257 U4.7-201ENST00000638126 106 ntBASIC3.83□□□□□ -1.8
CBX4O00257 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CBX4O00257 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.83□□□□□ -1.8
CBX4O00257 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CBX4O00257 AF127577.6-201ENST00000623352 2191 ntBASIC3.83□□□□□ -1.8
CBX4O00257 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.83□□□□□ -1.8
CBX4O00257 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.83□□□□□ -1.8
CBX4O00257 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CBX4O00257 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CBX4O00257 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.82□□□□□ -1.8
CBX4O00257 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CBX4O00257 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CBX4O00257 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.82□□□□□ -1.8
CBX4O00257 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms